Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01758 ATGGCCAGTTTCAAAGATTTAGTTTTCTTCCTCTCATTTGCTTCATTCATTGCTGCAGTCCTCTCTAATTCAGAAGGGGATGCTCTTGCTGCATGGAAAGCTCAACTGGTTGATCCAAACAATGTCCTTCAAAGTTGGGACCCGACTCTTGTAAATCCATGCACTTGGTTCCACATCACGTGCGACTCCAATAACAGCGTCGTTCGAGTGGATCTTGGCAATGCGAGTCTTTCTGGACCCCTTATTCCTGAGCTTGCAAACTTACCAAATCTTCAATATTTGATGGTATATGACAATAATTTGAGTGGTTCAATTCCAAGGGAGATAGGGATATTAGCAAATTTGAAAAGTTTGTTTCTGTACAATAACAACTTCACTGGGGCTTTACCACCTTCCTTGGGAAATTTGAGCTCTTTGTTATTTTTTGAAGCACAAGGCAACAGTTTTAGTGGAATGATTCCTGCATCATTTGGGGCCTTGACATCTTTGAAAACCTTGAGATTAGACAATAACAATCTTAGTGGCATCATCCCTTTCACTCTTCTGCAACTGGTTGACTTTGCCAATCTGCAGCTTCTGAATGTTTCGCTAAACTCGTTTACCGGGACGGTTCGCCCGACTAATTCATCAGTTGACTTCACTATGAATATATATATTCCTTTCAAAATTTCAAAAGATTTTAAGTATGGGATTCTTCGTACCACTCACCCTTCTTCTTCTGCTTCTTCTTCCAAAAGAGAGAGTTTTTGGAATTGTAAAATAGAGTTGTACACTTTTTGTGGTACCAATTACAAAATTTCCAAAAATGACAGAGAAAAGAGGGATGCTTTGTATGCCTTGAGGAGATCAGTGAAAGATCCAAACAATGTCTTGCAAAGCTGGGATCCAACTCTTGTTGATCCTTGTACCTGGTTCCATGTCACTTGTGACTCCGCTAACCACGTCACTCGCCTTGATCTTGGAAATGCAAAGCTTTCGGGCAACTTAGTACCCGAGTTGGGGAATCTCGAACACCTTCAATATTTGGAATTGTATATGAATCAATTGGTGGGTCCTATTCCAAAGGAGATCGGACGGTTGAAAAGCCTCATCAGCTTAGATCTCTACCACAACAACCTCACTGGCCCCATTCCTCCTTCCCTCAAAAACCTATCCAATCTCAACTTCCTGAGATTAAATGGGAATAGGCTCAGTGGAAGAATACCAAGGCAACTCATCAAACTTGGCAACCTAAAAATCATTGATGTGTCAGATAACGATCTGTGTGGGACGATCCCAACATCAGGCTCCTTCTCCAAGTTCTCGGAAGAAAGTTTCAAGAACAACCCGAGATTGGAAGGGCCAGAACTAATGGGGTTTGTGAGATATGAAAATGGAGGAAGCTGCTGA 1389 41.68 MASFKDLVFFLSFASFIAAVLSNSEGDALAAWKAQLVDPNNVLQSWDPTLVNPCTWFHITCDSNNSVVRVDLGNASLSGPLIPELANLPNLQYLMVYDNNLSGSIPREIGILANLKSLFLYNNNFTGALPPSLGNLSSLLFFEAQGNSFSGMIPASFGALTSLKTLRLDNNNLSGIIPFTLLQLVDFANLQLLNVSLNSFTGTVRPTNSSVDFTMNIYIPFKISKDFKYGILRTTHPSSSASSSKRESFWNCKIELYTFCGTNYKISKNDREKRDALYALRRSVKDPNNVLQSWDPTLVDPCTWFHVTCDSANHVTRLDLGNAKLSGNLVPELGNLEHLQYLELYMNQLVGPIPKEIGRLKSLISLDLYHNNLTGPIPPSLKNLSNLNFLRLNGNRLSGRIPRQLIKLGNLKIIDVSDNDLCGTIPTSGSFSKFSEESFKNNPRLEGPELMGFVRYENGGSC 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26311232 26323645 - Lsi09G017580.1 Lsi09g01758 671371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01758 462 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 8 179 - -
Lsi09g01758 462 SMART LRR_typ_2 384 408 IPR003591 -
Lsi09g01758 462 SMART LRR_typ_2 112 136 IPR003591 -
Lsi09g01758 462 SMART LRR_typ_2 160 183 IPR003591 -
Lsi09g01758 462 SMART LRR_typ_2 360 383 IPR003591 -
Lsi09g01758 462 SMART LRR_typ_2 88 110 IPR003591 -
Lsi09g01758 462 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 179 - -
Lsi09g01758 462 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 266 462 - -
Lsi09g01758 462 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 131 205 - -
Lsi09g01758 462 Gene3D Ribonuclease Inhibitor 21 216 IPR032675 -
Lsi09g01758 462 Pfam Leucine Rich Repeat 362 384 IPR001611 GO:0005515
Lsi09g01758 462 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Lsi09g01758 462 SUPERFAMILY L domain-like 272 434 - -
Lsi09g01758 462 Gene3D Ribonuclease Inhibitor 270 452 IPR032675 -
Lsi09g01758 462 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Lsi09g01758 462 SUPERFAMILY L domain-like 22 204 - -
Lsi09g01758 462 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lsi09g01758 462 Pfam Leucine rich repeat N-terminal domain 274 310 IPR013210 -
Lsi09g01758 462 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 266 462 - -
Lsi09g01758 462 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 131 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01758 - - - csv:101204454 353.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00566 Lsi-Chr3:6837849 Lsi09g01758 Lsi-Chr9:26311232 1.17E-51 dispersed
Lsi06g00446 Lsi-Chr6:4882068 Lsi09g01758 Lsi-Chr9:26311232 4.51E-57 dispersed
Lsi09g01758 Lsi-Chr9:26311232 Lsi03g00939 Lsi-Chr3:17977854 3.29E-59 dispersed
Lsi09g01758 Lsi-Chr9:26311232 Lsi02g00781 Lsi-Chr2:7205457 4.31E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1325 . . Bda01g02111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01822 Cme11g02357 . . . . . . . . Sed08g1027 . . . . . . Cpe17g00935 . Bhi12g02400 Tan06g1455 Cmetu11g0835 . Hepe03g1159 . . . . . . . . . Lsi09g01758 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109