Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01761 ATGAGATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAGTCTTTCCGTAACTTCTCCCTCAACCACCGTCTAGCCTCGGCTGCCCCTTCCTCCGCCGGAGTTCGGAGGTCTCCGTCGTCGTTTTCTTCTTCTTCTTCTTCCTCCGACGACGAACCTCATCTTCCTCTTCATCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCTTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTCTACTACAGAAACTGCCGGACTGGAATGAGAGTAAAGGAAGATCCGAGGACAGCGGAAGCACACAGCCGAGATTTATACTCGGAAGACGAAGACGACGACGGTGATGAGAGCTCGTCCGACGGCGGAAGTGAGGAGTCGTGTTCTTCGTCGTCGTACGGTGGTAGCAGACAGCAATATCCGGCGGAAAACGTGGAGGATGTGTTGGTGGTGGCCGGATGCAAGAGATGCTTCATGTATTTTATGGTGCCGAAACAGGTGGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTAGTTCATTTCGATCGCTCCGACGACAATAATGGCTTTCCATGA 606 52.15 MRSPDMAAVTDSLEQSFRNFSLNHRLASAAPSSAGVRRSPSSFSSSSSSSDDEPHLPLHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRTAEAHSRDLYSEDEDDDGDESSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDDNNGFP 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26339501 26341326 + Lsi09G017610.1 Lsi09g01761 671374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01761 201 Gene3D - 75 114 - -
Lsi09g01761 201 MobiDBLite consensus disorder prediction 132 149 - -
Lsi09g01761 201 MobiDBLite consensus disorder prediction 104 118 - -
Lsi09g01761 201 SUPERFAMILY WW domain 72 108 IPR036020 GO:0005515
Lsi09g01761 201 PANTHER BOMB/KIRA PROTEINS 36 195 - -
Lsi09g01761 201 MobiDBLite consensus disorder prediction 28 58 - -
Lsi09g01761 201 PANTHER BNAA04G19570D PROTEIN 36 195 - -
Lsi09g01761 201 MobiDBLite consensus disorder prediction 104 149 - -
Lsi09g01761 201 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01761 - - - csv:101221916 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00368 Lsi-Chr7:3947708 Lsi09g01761 Lsi-Chr9:26339501 2.20E-39 dispersed
Lsi09g01761 Lsi-Chr9:26339501 Lsi08g00961 Lsi-Chr8:18120411 1.48E-10 dispersed
Lsi09g01761 Lsi-Chr9:26339501 Lsi03g01852 Lsi-Chr3:29964862 8.39E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1329 Blo01g00160 . . Bda11g00377 Bpe13g00824 . . . . . . . . . . . . . . . . . . . Cla06g00164 Cam06g0049 Cec06g0183 Cco06g0176 Clacu06g0177 Cmu06g0172 Cre06g0946 . . . . . . Chy11g01824 Cme11g02359 . Blo12g00291 . Bda11g00377 . . . Bma06g01333 Sed07g0129 . . . . . . Cpe17g00937 . Bhi12g02398 Tan06g1452 Cmetu11g1288 . . . . . . . . . . . Lsi09g01761 . Chy07g01527 Cme07g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001835 4 2 2 3 3 2 4 2 2 2 2 2 2 2 2 3 2 2 4 2 2 2 2 2 2 2 2 2 2 1 68