Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01767 ATGGGTTTCTTTGCATTCACCATCCACACTCTTCTCTTCCTCTTCCTATTTTGCTTTCCCCTCTTTTTAGGTGCGAACTGCGGAGTTCAAACCGACGCCCTTGTTAGTTCCTCCCAGCATTTCGTGCCATTTCCTAAAACCTCCCATTTCAAGAATGGGTTTCAAAGGATTCTTCTCAGCGTCGCCTTAGGAGTCGTCACTGGACTCACTGCCGCTTTTCTCTCTGTTTGGTTCATTCGCACCCTTCTGGGTTACCTAAACAGAACTCCACTTCTTGAAGGACCCCTAATATTTTCCCCCAAAATCGACGCCGATGCTCTTCAATCAGCGCTGCGGGACCAAACCCAGTTGTTGGGTTCGAGTTCCAGCCCAAATACGAAGTGCTACAGGGCGATTCTCGCGAATGGGCTCACGGTGGCGGTGAAGAGGCTCGAACCCATTCAATGCGGAAGGACGGAGGCACGGCGGCGGATGCAGCAGCAGATGGCGGTGTTAGGTGGTTTGAAGCATCGGAATGTGATGAGTTTAAGGGCTTACGTCGGCGAAATGGGAAGCTGCTGTTTGGTTTATGACTTTGTGCCTACTGGGTCTCTTGAGGATGCAATGAAGAAAGTGAGAGAGAATCAATTGGAACTCAAATGGGAAGTTCGGCTGCGAATTGCTGTTGGGATTGCCAGAGGGCTTCAGTTTCTCCATTTTGAATGTAACCCTCGAATTCTTCACTGCAATTTGAAGCCTTCAAATGTGCTGTTGGATGCAGAGTTCGAACCAAAATTGGCTGATTTTGGGTTAACAAATCTCATCCCTGATTTTCATACACCAGCTTCTTTGTACACTGCTCCCGAGTGTCTTAACAGCTCCAGGTATACTGACAAGAGTGACATTTACAGCTTTGGGGTTATACTGAGAGTTCTGTTAACCGGTAGAGATCCGTCCGAGACCGAGCAGGCATCGTCGGATAGAGGGGATGGCAGTGGAAGTGGGGGAAGTTTAGGGCGTTGGCTTGAGCAATCAGTGGAGCCACGAGAAGCTCTGGATAAAAGCATTAGAGGAGAAGGAATGGAAGAAGAAGAAGAAGAGATGGTGTTGGCATTGAGAATTGCTGGTGTCTGCGCATCAGAATTGGCTGAAGACAGGCCTTGCAGCGATGAATTACTTGTGATGTTGACCCAATTACAGAGCTTTTAA 1188 48.4 MGFFAFTIHTLLFLFLFCFPLFLGANCGVQTDALVSSSQHFVPFPKTSHFKNGFQRILLSVALGVVTGLTAAFLSVWFIRTLLGYLNRTPLLEGPLIFSPKIDADALQSALRDQTQLLGSSSSPNTKCYRAILANGLTVAVKRLEPIQCGRTEARRRMQQQMAVLGGLKHRNVMSLRAYVGEMGSCCLVYDFVPTGSLEDAMKKVRENQLELKWEVRLRIAVGIARGLQFLHFECNPRILHCNLKPSNVLLDAEFEPKLADFGLTNLIPDFHTPASLYTAPECLNSSRYTDKSDIYSFGVILRVLLTGRDPSETEQASSDRGDGSGSGGSLGRWLEQSVEPREALDKSIRGEGMEEEEEEMVLALRIAGVCASELAEDRPCSDELLVMLTQLQSF 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26417938 26420376 - Lsi09G017670.1 Lsi09g01767 671380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01767 395 PANTHER LEUCINE RICH REPEAT KINASE 2 10 393 - -
Lsi09g01767 395 ProSiteProfiles Protein kinase domain profile. 112 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01767 395 MobiDBLite consensus disorder prediction 339 354 - -
Lsi09g01767 395 SUPERFAMILY Protein kinase-like (PK-like) 127 317 IPR011009 -
Lsi09g01767 395 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 10 393 - -
Lsi09g01767 395 Pfam Protein kinase domain 126 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01767 395 Gene3D Phosphorylase Kinase; domain 1 99 192 - -
Lsi09g01767 395 Gene3D Transferase(Phosphotransferase) domain 1 193 395 - -
Lsi09g01767 395 MobiDBLite consensus disorder prediction 312 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01767 - - - csv:101222394 615.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00387 Lsi-Chr7:4135304 Lsi09g01767 Lsi-Chr9:26417938 1.02E-118 dispersed
Lsi09g01767 Lsi-Chr9:26417938 Lsi06g01606 Lsi-Chr6:26428106 2.53E-49 dispersed
Lsi09g01767 Lsi-Chr9:26417938 Lsi08g01054 Lsi-Chr8:19156987 2.87E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1341 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00159 . . . . . . Cone14ag0652 Cone15ag0664 . . . Csa04g00228 Chy11g01830 Cme11g02366 . . . . . . . Bma06g01329 . . . . . . . . Cpe03g01179 Bhi12g02390 . . . . . . . . . . . . . Lsi09g01767 . Chy07g01542 Cme07g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013860 0 1 0 0 0 1 1 1 1 1 1 1 2 1 0 1 1 0 2 1 1 0 1 1 1 1 1 1 1 0 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83927 PF00069 Pkinase 5.40E-31 CL0016 Lsi PK