Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01768 ATGGCTTTGCAGCAGCTTAGCCTTGGCCCAACTCCTGTTGACGGCGTCACTAATGGCGTTGACGTCCGGCCGATGTCAACTGACGGCGGAGACGACGGCAGCAAAACCCCCAGGCTTCCTCGCTGGACCCGCCAGGAGATTCTCGTCCTCATACAGGGGAAGAAGGTTGCAGAGACAAGGGTTCGCGGTGGTCGGGCTGCTAGTCTCGCCTTTGGCTCCGGTCAGGTCGAGCCAAAGTGGGCCTCCGTTTCCTCCTACTGCAAGAGACATGGGGTCAATCGAGGTCCGGTTCAGTGTCGCAAGAGATGGAGTAATTTGGCAGGTGATTTCAAGAAGATCAAGGAGTGGGAATCCCAAATTAGGGAAGATACTGAATCCTTTTGGGTCATGAGGAACGATTTGAGACGCGAGAGGAAATTGCCAGGGTTTTTCGACAGAGAGGTTTATGATATTTTGGATTCCGGCTCCGGTCCTTCGCCGTCACCTGCTCTCGCTCTCGCCCTTACTCCTGTTCCTCTTCCTGCGCCACCCCCCGTTCTCAATTCCGATGAAGCCAAGCCCGACGCCGAGCCGGAACACGTCTTCGACAGTTCTAAAACTGCGGCGGCTGATGACGGTTTGTTTTCCGATTTCGAGCAGGATGAAACTAGCCGGAGCCCTTTGAAGGAAGTCTCCGGGAAGGAGGTTCCAGCACCGACGGCTGATGGGGCAATTCCTGCTCCGACGCCTTTATCAGAGAAACTGTACCAACCTGCTGGTCAAGATTGTCCTGACCAAGGCACAACAAATGAAAAAGAAGCAACAGCAAATCCCGAGATAGGATCGACGTCGTCACAAGAGGGACGGAAACGAAAGCGTGTTGCATTAGATGGGGACGAGGAAACCATTATACAGGATGAATTGATTGGGATCCTTGAAAAGAATGGGAAACTGCTGACTGCCCAACTCGAAGCTCAAAACATGAACTTCCAGCTGGACCGAGAGCAACGAAAGCACCACGCGGATGGGTTAGTCACGGTCCTTAACAAGCTCGCAGACGCTCTAAGCAGGATCGCGGATAAGCTGTAG 1068 53.65 MALQQLSLGPTPVDGVTNGVDVRPMSTDGGDDGSKTPRLPRWTRQEILVLIQGKKVAETRVRGGRAASLAFGSGQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLRRERKLPGFFDREVYDILDSGSGPSPSPALALALTPVPLPAPPPVLNSDEAKPDAEPEHVFDSSKTAAADDGLFSDFEQDETSRSPLKEVSGKEVPAPTADGAIPAPTPLSEKLYQPAGQDCPDQGTTNEKEATANPEIGSTSSQEGRKRKRVALDGDEETIIQDELIGILEKNGKLLTAQLEAQNMNFQLDREQRKHHADGLVTVLNKLADALSRIADKL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26424891 26427809 - Lsi09G017680.1 Lsi09g01768 671381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01768 355 MobiDBLite consensus disorder prediction 255 277 - -
Lsi09g01768 355 MobiDBLite consensus disorder prediction 1 38 - -
Lsi09g01768 355 Gene3D - 42 112 - -
Lsi09g01768 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 355 - -
Lsi09g01768 355 ProSiteProfiles Myb-like domain profile. 41 107 IPR001005 -
Lsi09g01768 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 355 - -
Lsi09g01768 355 MobiDBLite consensus disorder prediction 185 199 - -
Lsi09g01768 355 Pfam Myb/SANT-like DNA-binding domain 41 130 IPR044822 -
Lsi09g01768 355 MobiDBLite consensus disorder prediction 175 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01768 - - - csv:101222632 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02209 Lsi-Chr4:29124929 Lsi09g01768 Lsi-Chr9:26424891 5.88E-11 dispersed
Lsi05g01282 Lsi-Chr5:20599622 Lsi09g01768 Lsi-Chr9:26424891 1.49E-06 dispersed
Lsi09g01768 Lsi-Chr9:26424891 Lsi11g00018 Lsi-Chr11:167657 1.14E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1344 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00158 Cam06g0057 Cec06g0175 Cco06g0169 Clacu06g0169 Cmu06g0165 Cre06g0940 . . . . . . Chy11g01831 Cme11g02367 . Blo12g00294 . . . . . . Sed06g0273 . . . . . . Cpe17g00943 . Bhi12g02389 Tan06g1441 Cmetu10g1400 . Hepe03g1174 . . . . . . . . . Lsi09g01768 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005043 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25973 PF13837 Myb_DNA-bind_4 5.50E-11 CL0123 Lsi TF