Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01769 ATGCCGTCTGAAGTATTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACGTCATTCAGATGAGGGGCAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCGTGCTAGCAACATATCAGGTGCTTCATCATCTGTGGAAAAATTTTCAATAGGTGAGTGCCTGACAGAGAACTCACTGGAAAATCACGATTCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATCCTCAATAGACATGCTGTTGGAGCTGAAAGAACATCCAATTATTTTTCTCGAAGTAATGAAGTCAATATGATGAATTCTCAGTATGAGAGTAGTCTCTTCTCGAGTTCCTTATCAGATATATTTACTAGGAAGTTGCGCTTTTCTCCAAGCAATGCACTATATGGCCATTCTGTTGACACTGTTGCATCTCACTTTGAGGAGGAGGAAGTTTTTGAGTCACTTGAAGAATTGGAGGCCCAAACCATTGGAAACCTCCTCCCTGACGATGATGACTTACTTGCTGGAGTAACTGATGGGCTTGATTGTTTGGTTGAAACAACTGGCGAGGATGATGCTGAGGACTTGGATTTTTTTAGCAGTGTTGGAGGGATGGATTTGGGTGATGATGGGTTATCTGTGGGACAGAAGAATTCTGAATCTCCTGGAGGACTTTTTAACAATTTGCCGGGGATGCATAATGGTGCTATGGCTGGAGAGCATCCTTTAGGTGAACATCCTTCCAGGACACTGTTTGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGCACTCTTTATACAGCATGCAAACATCGAGGTTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCCGTTTCCAATGAAGAACTTCGTCAAATATTTGGTGTCTATGGAGAAATCAAGGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGCAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTACAACAATTACATCCACAGTTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCATTAACTGTAGTGCCGGCTTCTCTGGCTTAGTTCCTAGTGGAACTATCAAGTCTAGCAGCCTGAGTAACGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTCTGGAGACTGTGTTGCATCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATCGACTCTGGTCATTCACCTTCACAACTGAAGCTGGGTATCCGGGCATCTTCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAATGTTCACTGCAGTTCTCTAAATACGATTGCAGGAAACATCAGTCTACGACCACCCGAAAGAGCTGATAGCAGGCAGCTGTGTGGAGTGAACTTTAATGGTCGCTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGACCTCATTATACATGGGGTAACAACTCCTACCGGCCCCAGCCTCCAGCTCCAGGTGTTGTATGGCCAAATTCTCCGTCATATATGAATGGAATTTCTGCTGCCCATACCCCGACCCAGGTCCATGGAGTTCCAAGAGCAGCATCTCATTTGATGCACACAGTTATGCCGATGAATAATCACCACGTTGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAAGCCTCTGGTTTCCATTCAGGTTCTATAGGGAATATGAATTTGTCTAACAATTCACCACAGTCTATGGATTTTTTCTCTCATATCTTCCCACAAGTTGGTGGAAATTCTGTGGAGCTTCCTATTCCCCAACGTAATGTAGGACTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTTCAAATGAACGTGCTAGAAGTCGAAGAAATGAAGCAGCCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATTGATCGCATAATGAGGGGTGAAGACAATCGTACTACACTTATGATAAAGAACATTCCTAACAAATATACCTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACTTATGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAACGTGGGATATGCGTTCATTAACATGACTGATCCTGGCCTAATCATTCCATTCTATGAGGCATTTAATGGGAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAGGGAAAAGCTGCTCTCATCGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACAGATGGCCCCAATGCAGGTGATCAGGTTCCATTTCCAATGGGGGTAAATGTTCGAACTAGGCCTGGAAAAACCCGAACCAATACGCAGGACGAAAATCCTGATGAAGGTCTAATAATTTCTGGAAATGGTGAGACTTATTCCAGTGGAGACGCATCTTCTTCATGTCTTGTAAAGGATTTGGACCAGCCAGTACCATAA 2913 42.88 MPSEVLDLKGLSSSSFFSDDLRHSDEGQVGVWKSASVPNHRASNISGASSSVEKFSIGECLTENSLENHDSFPVRDQNASLILNRHAVGAERTSNYFSRSNEVNMMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVTDGLDCLVETTGEDDAEDLDFFSSVGGMDLGDDGLSVGQKNSESPGGLFNNLPGMHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEREDIGLYLQQGSPPINCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLETVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASSAVHPHSLPEHPDGLNNNVHCSSLNTIAGNISLRPPERADSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYTWGNNSYRPQPPAPGVVWPNSPSYMNGISAAHTPTQVHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERARSRRNEAASNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRTNTQDENPDEGLIISGNGETYSSGDASSSCLVKDLDQPVP 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26445413 26454528 + Lsi09G017690.1 Lsi09g01769 671382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01769 970 MobiDBLite consensus disorder prediction 923 970 - -
Lsi09g01769 970 Pfam RNA recognition motif 2 791 887 IPR007201 -
Lsi09g01769 970 Gene3D - 240 333 IPR012677 -
Lsi09g01769 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 955 - -
Lsi09g01769 970 SUPERFAMILY RNA-binding domain, RBD 247 410 IPR035979 GO:0003676
Lsi09g01769 970 Gene3D - 334 424 IPR012677 -
Lsi09g01769 970 SMART rrm1_1 793 869 IPR000504 GO:0003723
Lsi09g01769 970 SMART rrm1_1 336 404 IPR000504 GO:0003723
Lsi09g01769 970 SMART rrm1_1 251 319 IPR000504 GO:0003723
Lsi09g01769 970 CDD RRM2_MEI2_like 334 404 - -
Lsi09g01769 970 PANTHER PROTEIN MEI2-LIKE 4 2 955 - -
Lsi09g01769 970 MobiDBLite consensus disorder prediction 488 513 - -
Lsi09g01769 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 323 IPR000504 GO:0003723
Lsi09g01769 970 MobiDBLite consensus disorder prediction 936 960 - -
Lsi09g01769 970 SUPERFAMILY RNA-binding domain, RBD 793 878 IPR035979 GO:0003676
Lsi09g01769 970 MobiDBLite consensus disorder prediction 757 773 - -
Lsi09g01769 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 402 IPR000504 GO:0003723
Lsi09g01769 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 316 IPR000504 GO:0003723
Lsi09g01769 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 408 IPR000504 GO:0003723
Lsi09g01769 970 MobiDBLite consensus disorder prediction 754 773 - -
Lsi09g01769 970 CDD RRM3_MEI2_like 794 879 IPR034454 -
Lsi09g01769 970 CDD RRM1_MEI2_like 249 325 IPR034453 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01769 - - - csv:101222875 1860.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01631 Lsi-Chr8:24222461 Lsi09g01769 Lsi-Chr9:26445413 1.93E-28 dispersed
Lsi09g01769 Lsi-Chr9:26445413 Lsi11g01636 Lsi-Chr11:24689574 0 dispersed
Lsi09g01769 Lsi-Chr9:26445413 Lsi04g00631 Lsi-Chr4:5788627 1.17E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46