Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01770 ATGGCTTGTTTGGCCACTACCCATGCCTTGTTTTTTCAATCTTTTTTTGGTTTTGGTTTTGGTTTTGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGTGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTAAGATTTAAAGGAACCAAAGCCAAGCTTAATTTTCCTGAACGAGTTCAAGCCAATCCTGCTGACTTTGGCTTTCTTCCCTCCGCCACCGCCGCTGCTTCTTCTGCTGCTCCACCTCCCCCAGCCACCGTGGCTTCATTTTCATTGCCTTCTGTTTCTCTTCCGCCGCCGTTGTCAGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAACCCCATTATCCTTCTTCTTCTCATACTCAACAACACCAACAAGATCAGGATCACTACGGCAAAGGTTTCGGCACCGGTGGCTCACCCAATTAG 600 48.17 MACLATTHALFFQSFFGFGFGFETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQPHYPSSSHTQQHQQDQDHYGKGFGTGGSPN 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26473043 26474152 + Lsi09G017700.1 Lsi09g01770 671383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01770 199 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 MobiDBLite consensus disorder prediction 168 199 - -
Lsi09g01770 199 PANTHER - 26 176 - -
Lsi09g01770 199 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Lsi09g01770 199 MobiDBLite consensus disorder prediction 168 187 - -
Lsi09g01770 199 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Lsi09g01770 199 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Lsi09g01770 199 PANTHER DNA-BINDING DOMAIN 26 176 IPR044808 GO:0003700|GO:0009873
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01770 - - - bhj:120067644 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01770 Lsi-Chr9:26473043 Lsi07g00649 Lsi-Chr7:6907524 1.52E-27 dispersed
Lsi09g01770 Lsi-Chr9:26473043 Lsi03g00490 Lsi-Chr3:5589479 8.43E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25974 PF00847 AP2 6.40E-14 CL0081 Lsi TF