Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01778 ATGGCAGAGAGTCAAGAGACGAAGCAATCAGCGGTGCCTATCTACAGTAGAAATGATAATGAGAAGAATAAGGAGGCTGTGGTAATTGTGGTGAAGGATAATCTCAACAAATTGTTGGATTCAGTTGTGGTAGATGAGTGCAGATCATCAGGAAAAAGCATCCAACCTTCGATATACAAAATACCAAAATTCATGAAAGGAATTAATGAAGGGAAAGCATTCGAGCCACAGTTGGTTTCGTTTGGGCCATACCACCATGGGAAACAACATTTGGTTCCAATGGAACAGGAAAAACTGAAAGCATTTTGGCGTTTCATTAACGAATATGGAGTGAAGTTCGAGTCGATTGTGGAGTGTGTGTCTAACAATTTGGAATATCTGTTGGGAGCGTATGATAAGCTTGATGAAAATTGGAAGAATAAAGATGCTGCTAAGTTCTTTGAGTTAATGATATTGGATGCTTGTTTCATGCTGGATTTCTTCAAGAAATGTCCAAAATCCTTAAGTACTTTGAGTTGGGATATAAAGCGGGATATGCTGCTGCTTGAGAATCAGCTACCCTTCAAACTTCTTCGACAGTTGTATGCCAAATTAATGAACAAGTCAATGTTCATCGAACATGTGGATGCGGTAATAGGAAAGGATTTGCATATTTTGGAGATGTATAGAGCGTCATTATTGTATCCTCCAGTAGACAGAAAGGATCATAGTGGGAAGGAAAAAACGTATGACCAATCGGCTCCAGAGTGTCAAATAATTCCACAAGCAACACAGCTTCGTGAAGCAGGGATAAAATTCAAGAAAAGTCCTACAAAAAACCTTACAGACGTGAGTTTTGACACAAAACAAGGCGTGTTGGAACTGCCACATTTAGTAGTAGATGATGATAGTGAAACAATATTATTAAATGTGATGGCATTTGAGAAACTGCATGTGAAAGCTGGAAGTAAAGTGACATCTTTCATAATATTGATGAATAATTTGATCGATGTGGATGAAGATGTGGCGTTGTTGGCTTCTAGTAAGATATTAGCCAATGCGCTTGGGAATGATCAAAATGCGGCGGATTTGTTTAGTTTGCTTGGGAAAGGAGCGGCTATGGATTTGGATAGCCACATAACAGATGTGCATTACAAGGTGAATAAACATTGCAGTCAGTCTTGGAATCAATGGTGTGCAAGTCTTAAACATAATTACTTTCAAAACCCATGGGCTATTATCTCACTCCTTGCAGCTATTTTCGATGCAAATGACTCTTCTTTGGGAGGTTTAATCTGGTCTTCCGCAAAAGAAGAGGGAGATCTCCTTATCGAGCACAGACCCCATGAAGATTCCGCCGCCGCTACACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGCTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTAAAGGATACTGCGCAGGATGTGAAACGATTGTCTCCAAGTGAAATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTGTCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTAGTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAGCTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATGTCGACCCTGATGTTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCTTCGTTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACTATGCTTCAGGATATTCTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGAACTTTTTTTGGAGATCACCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCGACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTAGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAATGGAAGAGGAAGATCACCGAGATTATGCAATGGATGTGGAAATTCTACGAAGCCAAGTGGAGTTAATTTTCCTTGAAAAGCTGGGAAAGGTAGTTTCTTCTTTCTACTCTCAGATCAATTATTGTAATGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATTATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGCGCTATCACATCTGCTCAGCAGAGGCTCAAGCTTTACAACAAGGTTCCTCCAAATGGGCTTGTGCTGTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTTACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGCGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTCGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCTACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCTAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGTTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACGGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTCATTGTTTGGGAAAACTTAGATATCAATAGGTATGTCTTAAAGAATGCTTCCACTGGTGAGATTATTATAAAGCACTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACTCCGTCACCTCTGCTGAGTTAGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCGAATGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 3711 40.99 MAESQETKQSAVPIYSRNDNEKNKEAVVIVVKDNLNKLLDSVVVDECRSSGKSIQPSIYKIPKFMKGINEGKAFEPQLVSFGPYHHGKQHLVPMEQEKLKAFWRFINEYGVKFESIVECVSNNLEYLLGAYDKLDENWKNKDAAKFFELMILDACFMLDFFKKCPKSLSTLSWDIKRDMLLLENQLPFKLLRQLYAKLMNKSMFIEHVDAVIGKDLHILEMYRASLLYPPVDRKDHSGKEKTYDQSAPECQIIPQATQLREAGIKFKKSPTKNLTDVSFDTKQGVLELPHLVVDDDSETILLNVMAFEKLHVKAGSKVTSFIILMNNLIDVDEDVALLASSKILANALGNDQNAADLFSLLGKGAAMDLDSHITDVHYKVNKHCSQSWNQWCASLKHNYFQNPWAIISLLAAIFDANDSSLGGLIWSSAKEEGDLLIEHRPHEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLIHELNHVDPDVRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERTFFGDHLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLMEEEDHRDYAMDVEILRSQVELIFLEKLGKVVSSFYSQINYCNVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNASTGEIIIKHLNKEQEANQSNFRDSVTSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26524696 26543723 + Lsi09G017780.1 Lsi09g01778 671391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01778 1236 Gene3D eRF1 domain 1 797 935 IPR024049 -
Lsi09g01778 1236 Gene3D eRF1 domain 2 936 1077 IPR042226 -
Lsi09g01778 1236 Pfam eRF1 domain 1 818 938 IPR005140 -
Lsi09g01778 1236 Gene3D - 1079 1236 IPR029064 -
Lsi09g01778 1236 Gene3D - 498 778 IPR011989 -
Lsi09g01778 1236 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 801 1236 IPR004403 GO:0003747|GO:0006415
Lsi09g01778 1236 SUPERFAMILY L30e-like 1078 1220 IPR029064 -
Lsi09g01778 1236 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 812 1217 IPR004403 GO:0003747|GO:0006415
Lsi09g01778 1236 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 801 1236 - -
Lsi09g01778 1236 SMART arm_5 682 722 IPR000225 GO:0005515
Lsi09g01778 1236 SMART arm_5 549 589 IPR000225 GO:0005515
Lsi09g01778 1236 SMART arm_5 590 628 IPR000225 GO:0005515
Lsi09g01778 1236 Pfam eRF1 domain 3 1081 1218 IPR005142 -
Lsi09g01778 1236 SMART eRF1_1_2 804 940 IPR005140 -
Lsi09g01778 1236 Pfam eRF1 domain 2 944 1077 IPR005141 -
Lsi09g01778 1236 SUPERFAMILY Translational machinery components 942 1076 - -
Lsi09g01778 1236 Coils Coil 523 543 - -
Lsi09g01778 1236 Pfam Plant protein of unknown function 58 414 IPR004158 -
Lsi09g01778 1236 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 806 940 IPR024049 -
Lsi09g01778 1236 SUPERFAMILY ARM repeat 504 735 IPR016024 -
Lsi09g01778 1236 Pfam Nucleotide exchange factor Fes1 465 556 IPR013918 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01439 Lsi-Chr1:12550998 Lsi09g01778 Lsi-Chr9:26524696 6.74E-11 dispersed
Lsi06g00004 Lsi-Chr6:31286 Lsi09g01778 Lsi-Chr9:26524696 2.30E-18 dispersed
Lsi09g01775 Lsi-Chr9:26497321 Lsi09g01778 Lsi-Chr9:26524696 5.90E-102 dispersed
Lsi09g01776 Lsi-Chr9:26505481 Lsi09g01778 Lsi-Chr9:26524696 3.30E-153 dispersed
Lsi09g01778 Lsi-Chr9:26524696 Lsi01g00958 Lsi-Chr1:7765683 6.53E-59 dispersed
Lsi09g01777 Lsi-Chr9:26517988 Lsi09g01778 Lsi-Chr9:26524696 7.83E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01778 K03265 - csv:101218139 841.262