Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01779 ATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTGTCTATATTTTCTCAACTCTTGCTTCTTTCATTCTCTCGAGCACACATTTCTTAACTCCTTTCTTCTCGTCTCCAGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGATCCACTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTATATGTCATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTTGTTCCAGGTGAGTTAGAGAATACATCCAAACCTGTGGAGGAGAAACAAACTTCAAACGTGTCTGCACCAACACCGGAGCAGATAATAGCTATTAAGGCGGCCATTGTAAATTCTCAAACTCTTGAAGAAGTTGCGAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACGAAAGATACAGACGATAAGACAATGTCTGATAATGGAGACGAAGAAAATGTATCCAAGGATGTTAAAGAGCAATCGAATGATGAATCTACACCTATGGAGCAGTTTGAGAAGTCTAAGTATGGCACTTCCCAGCCTGGGGATGCTAGGCGGCTCGTTTGCCTCTTTTAA 903 40.42 MPLKSENWTFEVVYIFSTLASFILSSTHFLTPFFSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQFEKSKYGTSQPGDARRLVCLF 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26544333 26551745 - Lsi09G017790.1 Lsi09g01779 671392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01779 300 MobiDBLite consensus disorder prediction 166 194 - -
Lsi09g01779 300 PANTHER BNAC08G13840D PROTEIN 37 235 - -
Lsi09g01779 300 Pfam Leucine-rich repeat 88 167 - -
Lsi09g01779 300 Pfam Leucine-rich repeat 36 87 - -
Lsi09g01779 300 PANTHER U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A 37 235 IPR044640 GO:0000398|GO:0030620
Lsi09g01779 300 SUPERFAMILY L domain-like 38 147 - -
Lsi09g01779 300 SMART LRRcap_2 122 140 IPR003603 -
Lsi09g01779 300 MobiDBLite consensus disorder prediction 243 279 - -
Lsi09g01779 300 Gene3D Ribonuclease Inhibitor 90 170 IPR032675 -
Lsi09g01779 300 Gene3D Ribonuclease Inhibitor 19 89 IPR032675 -
Lsi09g01779 300 MobiDBLite consensus disorder prediction 234 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01779 K11092 SNRPA1; U2 small nuclear ribonucleoprotein A' - csv:101203800 358.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0631 Cone15ag0640 . . . . Chy11g01844 Cme11g02381 . . . . . . . . . . . . . . . Cpe17g00951 . . . . . . . . . . . . . . . Lsi09g01779 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013718 1 1 2 1 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 0 1 25