Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01787 ATGATGGATGGTTGGTTAACAGCTCTCATTGCCCTTTCCATTTGTGCAATCTTTCACTTAGTTTTGAGCTATATCTTGAATCGCAAGCAAAATCTCCCTCCTGGTCCTCTTGCTTTACCTCTTATAGGCAATCCCATATGGGTTTTCAAGCCTCTCTCTCAACTTGAAACCATCCTCCGCCATTACCATTCCAAATATGGCCCTGTTGTAACCCTTTACTTTGGTAACACTCCTTCCATTTTCATAGCTAGCCACTCTGTTTCTCATCATGCTTTGGTTCAAAACGGCGCCGTCTTCGCCGACCGTTTCCCCGTCATGGAAACTGCCAAAATCATCACTAGTAACCAACATAATATCAGCACTGCCTTCTACGGTCCAACATGGCGCATCCTCCGCCGTAACCTCACCTCCGAGCTCCTCCATCCGTCTCGGTTGAAAGCTCATTCGCTTTCTCGTAAATGGGTGTTGGATGTTCTTGTTCATCGTCTCCATCAAGCACCTGGTCCTGTAAAGCTCATTGACCATCTTCGTTATGCTATGTTTTGTTTAGCTACAACTATGTGTTTTGGGGAGAGATTTGATGAGAAATTGATTCATGAAATACAAGAATCTCAACGTGGGGTGTTGTTGAATATCAGTAAGTTCAATGATCTTAATTTTTGGCCTCCTAGATTGGGGAAGTTCTTGTTCAAGAAACGTTGGGACGAGATTCGTCAACTACGTAAACGACAAGATGATATATTATTACCTTTGATTAATAATGCAAGAAAAAACAGAACAACAACAATCAAAGATCAAGAAGCTGCAGGGAAGCCAATCCCTTATGTTGATACTCTGTTTGATTTGGAAATTGCTGACAACAATGATGAGAAGGTAAAGAGGAAATTAGTAGATGATGAACTCATAACATTATGCTCTGAGTTTATCGACGCCATTACCGATACAACGACCGCATCGTTGCAATGGATAATGGCGAATGTAGTGAAGTACACAGAAGTTCAAGAGAAAGTGTACAATGAGATAAAAGAAGTGATGGGAAATAAGAAAGATGAAGAGATAGAAGAGGAGGATTTGGGGAAGATGATATATTTGAAAGCAGTAGTAATGGAAGGACTACGGCGACATCCCCCGGGGCATTTGTTGTTGCCTCATAAAGTGATGGAGGAGAGTGTTTTGGAAGGAGGATACAAGGTGCCAAAAGGAACATCAGTGAACTTTATGGTAGCAGATATGGGTTGGGACGCGAACGTATGGCCGGAACCGATGGCGTTTAAGCCGGAGAGATTCTTGAATGATAGGTCAGAGGGAGGGGTTGAGTTGGAAGTTGATATCACAGGGAGTAAGGAAATAAAGATGATGCCATTTGGGGCTGGGAGGAGGATATGCCCAGGATATGCATTGGGGTTATTGCATTTGGAGTATTTTGTTGGGAATTTGGTGTGGAATTTCAAGTGGAAGGCTGCTGGGGAAGTTGATTTGTCTGAGAAACAAGAATCTGCTGTCAATATGAAACATTCCTTGCTTGCTTACTTGTCTCCAAGGGCTGTTTCTTAG 1554 42.66 MMDGWLTALIALSICAIFHLVLSYILNRKQNLPPGPLALPLIGNPIWVFKPLSQLETILRHYHSKYGPVVTLYFGNTPSIFIASHSVSHHALVQNGAVFADRFPVMETAKIITSNQHNISTAFYGPTWRILRRNLTSELLHPSRLKAHSLSRKWVLDVLVHRLHQAPGPVKLIDHLRYAMFCLATTMCFGERFDEKLIHEIQESQRGVLLNISKFNDLNFWPPRLGKFLFKKRWDEIRQLRKRQDDILLPLINNARKNRTTTIKDQEAAGKPIPYVDTLFDLEIADNNDEKVKRKLVDDELITLCSEFIDAITDTTTASLQWIMANVVKYTEVQEKVYNEIKEVMGNKKDEEIEEEDLGKMIYLKAVVMEGLRRHPPGHLLLPHKVMEESVLEGGYKVPKGTSVNFMVADMGWDANVWPEPMAFKPERFLNDRSEGGVELEVDITGSKEIKMMPFGAGRRICPGYALGLLHLEYFVGNLVWNFKWKAAGEVDLSEKQESAVNMKHSLLAYLSPRAVS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26611497 26613050 - Lsi09G017870.1 Lsi09g01787 671400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01787 517 Pfam Cytochrome P450 33 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Lsi09g01787 517 PANTHER CYTOCHROME P450 5 513 - -
Lsi09g01787 517 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 513 - -
Lsi09g01787 517 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 SUPERFAMILY Cytochrome P450 31 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01787 517 Gene3D Cytochrome P450 25 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01787 Lsi-Chr9:26611497 Lsi10g00246 Lsi-Chr10:4084478 0 dispersed
Lsi09g01787 Lsi-Chr9:26611497 Lsi08g00659 Lsi-Chr8:14933121 2.43E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01787 K24184 - csv:101204774 871.692