Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01788 ATGGAAGACTCCATCTTACTCTATTCAGCCTTTTCAATTCTGAGTATTGCTGTAGTTTTGGCAATCATAAAGTATTTGTTTAAATCCAATTCCTACAAAAATCTCCCTCCAAGTCCACCCTCTATTCCAATTATAGGTCACCTCCATCTCCTTAAGCTTCCAGTTCATAGAAGCCTACAAACTCTCACACAAAAGCATGGTCCAGTACTTTCTCTCCGATTCGGCTCTCGTTTAGTCGTCGTCGTATCGTCAATGGAAGCTGCCGAAGAATGCTTCACCAAAAACGACATCGTTTTCGCAAACCGTCCTGACTTTGCCGTGAGCCGGTGCTTGAGTTACAACCAAACCACCCTCGGAGCGGCACCCTACGGTGACCATTGGCGTAAACTTCGACGTGTGAGTGCACTCGAAATATTGTCTTCGAATCGGCTTAACGCGAATTACGAGATTCGGAGAGACGAAGTGAGAAGAGCAATGAAGAAGATATATGAAGTTTCAAGAGATGATTTTGGAAAAGTGGAGTTCAAATCAATGGTGAAGGAATTGACATTGAATATAACAATGAGAATGGTTGCAGGGAAGAGATATTATGGTGAAGAAGCAGCTAAAAGTAGTGAAGCAAGAACATTCCAAGCTATTGTGGATGAGCTATTTGAATTTACTTTGTCTTCATATCCAGCTGACTTCTTGCCAATTTTGAAGTATATTGATATTCAAGGCTTTATGAAAAGGGCAAAGAAGCTTATCACAAGAGTTGATGCATTTTGGCAAGGACTGATTGATGAGCATAGAAGAGGTGAAATCAGTAATGAAGAAATGGAGAATTGTATGGTTGCTCATTTCCTTAAGTTGCAAGAGTCCCAGCCTGAGTATTATACAGATGATATTATCAAAGGCTTGATTTTGACGATGATACTCGGTGGCTCAGACACTACTGCGGTGACAATAGAATGGGCAATGTCAAATCTCCTAAACCATCCATCGGTATTGAAGAAGGCAAGAGCTGAATTAGAGTCTCAACTTGGTGAAGATCAATTGCTCGAAGAATCTGATCTTTCAAAACTAAGTTACCTACGATGTATAGTCCTAGAAACTCTTCGGTTGTACCCGGCTGGCCCGCTCCTACTGCCACATAAGTCTTCTGCTGACTGTACCGTATCGGGATACAACGTGCCACGTGACACAATCTTATTAGTAAACGCGTGGGCCATCCATAGGGACCCCACATTGTGGGAAGATCCAACAAGTTTTAAACCAGAGAGGTTTGAGAATAATGGGGAAGGGGATGCAAATAGTAAGTTAATGATAGCATTTGGTTTGGGAAGGAGAGCTTGTCCAGGAACTGGAATGGCACATAGAGTGTTGGGTATGAGTCTTGGACTGTTGATTCAATGTTTTGATTGGAAGAGTATTGAAGGTAAGGAAGTAGATATGACTGAAGGAAAAGGGGTTAGTATGCCTAAAGCTCAACCACTTGAAGCACTATGTAAAGCAAGAGAAATTGCAACCAAACTGCTTTGA 1521 41.81 MEDSILLYSAFSILSIAVVLAIIKYLFKSNSYKNLPPSPPSIPIIGHLHLLKLPVHRSLQTLTQKHGPVLSLRFGSRLVVVVSSMEAAEECFTKNDIVFANRPDFAVSRCLSYNQTTLGAAPYGDHWRKLRRVSALEILSSNRLNANYEIRRDEVRRAMKKIYEVSRDDFGKVEFKSMVKELTLNITMRMVAGKRYYGEEAAKSSEARTFQAIVDELFEFTLSSYPADFLPILKYIDIQGFMKRAKKLITRVDAFWQGLIDEHRRGEISNEEMENCMVAHFLKLQESQPEYYTDDIIKGLILTMILGGSDTTAVTIEWAMSNLLNHPSVLKKARAELESQLGEDQLLEESDLSKLSYLRCIVLETLRLYPAGPLLLPHKSSADCTVSGYNVPRDTILLVNAWAIHRDPTLWEDPTSFKPERFENNGEGDANSKLMIAFGLGRRACPGTGMAHRVLGMSLGLLIQCFDWKSIEGKEVDMTEGKGVSMPKAQPLEALCKAREIATKLL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26616377 26618567 + Lsi09G017880.1 Lsi09g01788 671401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01788 506 SUPERFAMILY Cytochrome P450 36 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Lsi09g01788 506 Pfam Cytochrome P450 36 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 Gene3D Cytochrome P450 27 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 12 501 - -
Lsi09g01788 506 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01788 506 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 12 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01511 Lsi-Chr4:22748193 Lsi09g01788 Lsi-Chr9:26616377 0 dispersed
Lsi09g01788 Lsi-Chr9:26616377 Lsi10g00169 Lsi-Chr10:2729368 2.32E-137 dispersed
Lsi09g01785 Lsi-Chr9:26602621 Lsi09g01788 Lsi-Chr9:26616377 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01788 K13260 - csv:101208069 893.264