Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01795 ATGGCCGGCTTGGTCACTGGTTCCCAACACTATCCCCACGTTGCTGATGAGAATCTTCGTGGACTTCCATTGTCGTCGAAAATATGTCGAGTTTGTGGCGATGAAATAGGACTCAAAGAAGATGGGAAAGTATTCGTGGCATGTCTTGTGTGCAATTTTCCTGTTTGCCGCCCTTGTTATGAGTATGAAAGGAGTGAAGGCAACAAGTGTTGTCCCCAATGCAACACTCGCTACAAGCGTCACAAAGGTTCTCCCAGAGTGATTGGCGACGAGGAAGAATGTGACGACGCAGATGATTTTGATGATGAATTCCCCATTAAACACCACAACAATGACGAATTTCAAACGAAACAGCTTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCAGAAAAATGTGCATAATTCGTTCTCAGTTGCAGGAAGTGTGAATGGGAAGGATTTGGAAGGGGAGAAGGAAGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGTAACAAAGAGGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCGCGGCAACCGCTATGGCGGAAACTTCCAATATCTTCAAGCAAAATCAGTCCATATCGCATAGTCATTGTCCTCCGCCTCGTAATTCTTGCATTCTTTTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATCTGGTTCGGTTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTCGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGGTCGACTTCTTCGTCAGTACGGTGGACCCTCTGAAAGAGCCACCGATCATAACCGCCAACACTGTCCTCTCCATCCTCTCGGTCGACTATCCGGTCGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGACACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGTGTCGAACCTAGGGCTCCGGAGTTCTACTTTTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGCCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGAATCAACGCGTTGGTGGCGAAAGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCACCCTGGCATGATACAGGTGTATCTAGGAAGTGAAGGGGCACTTGATGTTGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCTGTCCTCACAAATGCACCATTTATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCATGACAGATATGCTAATCGGAATATAGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCCGAGAAAAGGCCAAAGATGACATGCGATTGCTGGCCTTCCTGGTGTTGCTGCTGCTGCAGTGGTTCAAGGAAGTCGAAGTCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGATCTTGAAGAAATTGAGGAAGGGTTTGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCGCAAAAGAATTTTGAGAAAAGATTCGGACAGTCACCAGTTTTCATCGCTTCCACCCTTAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACATCACTCGTTAAAGAAGCCATCCATGTGATTAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGTTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCCCAGAGACCAGCTTTCAAGGGATCGGCTCCGATAAATCTTTCTGATCGTTTGCACCAAGTTTTGAGATGGGCTTTAGGTTCTGTTGAAATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTCGAGAGGCTTGCCTACATCAACACTATTGTTTACCCATTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACGCTGACGAACTTGGCTAGTGTCTGGTTCATGGCCTTGTTTATTTCCATCATTGCGACAGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATCGAAGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTTTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTCGGTGGAGTAGACACCAACTTCACAGTTACGGCAAAAGCCGCTGAAGACACTGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACCCTCCTTATCCCGCCGACCACTCTCATAATCTTGAACATGGTAGGAGTGGTTGCTGGAGTTTCAGATGCAATCAACAATGGCTACGGTTCATGGGGTCCTTTATTTGGAAAGCTGTTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACCCCCACCATTGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGAATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3120 46.99 MAGLVTGSQHYPHVADENLRGLPLSSKICRVCGDEIGLKEDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDEEECDDADDFDDEFPIKHHNNDEFQTKQLNHSENDNYNEQNWQKNVHNSFSVAGSVNGKDLEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPVDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCSGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26684478 26692415 - Lsi09G017950.1 Lsi09g01795 671408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01795 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 850 IPR029044 -
Lsi09g01795 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 24 113 - -
Lsi09g01795 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 154 1039 - -
Lsi09g01795 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 404 590 IPR029044 -
Lsi09g01795 1039 CDD mRING-HC-C4C4_CesA_plant 27 77 - -
Lsi09g01795 1039 Pfam Cellulose synthase 298 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi09g01795 1039 Pfam Zinc-binding RING-finger 24 95 IPR027934 -
Lsi09g01795 1039 SUPERFAMILY RING/U-box 24 100 - -
Lsi09g01795 1039 Coils Coil 396 416 - -
Lsi09g01795 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 102 IPR013083 -
Lsi09g01795 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 113 - -
Lsi09g01795 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 154 1039 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00827 Lsi-Chr2:7687785 Lsi09g01795 Lsi-Chr9:26684478 0 dispersed
Lsi09g01795 Lsi-Chr9:26684478 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01795 K10999 - csv:101205733 1986.07