Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01808 ATGGCTTCTACTACTGGTCTTGTAGTTGGTTCTATTGTTTGGTTGGAGGACTCTGAAGAAGCTTGGATAGAGGGCGAAGTTGTAGAAGTTCGTGGTGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGTAGTTAAAGCAGCTAACGTCTATCCCAAAGATTCTGAAGTGCCACCCTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTGAACCCTTTTACAAAGTTGCCCCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCCGCATTTGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATTCTGCCTACAGGCATTTTCCCACAATACTTTTACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTGCTGAAGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCAAAAACTGTTCGTAACAACAACTCAAGTCGTTTTGGTAAGTTTGTGGAGATCCAATTTGACCAAGGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCTCGTGTTTGTCAGGTGTCTGATCCAGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGGATTAGTTCGGATGAGCAGGATGGAATATTTCGTGTTGTGGCTGCAATTCTTCATCTTGGAAACATTGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGATTCTCTCTGCAAACGTGTGATCGTCACTCGTGATGAAACTATCACAAAGTGGCTGGATCCAAATTCTGCAGCCCTTAGTAGAGATGCTTTGGCAAAAATTGTATACTCAAGGTTATTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGCCAGGATCCTGATTCAAAGTTCTTGATTGGAGTACTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAGTTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGACGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATACAAAAATCATAGACGCTTCAGCAAACCGAAATTAGCCCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGATTATGTTGTTGCTGAACACCAAGCGCTCTTGACTGCTTCCAAATGCTACTTCGTGTCATGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACTCTAAGTGCTACCGAGCCCCATTACATTCGATGTGTAAAACCCAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAGAATATATTACAACAACTACGTTGCGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACTTTTGACGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTGAGGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCTGGTCAGATGGCTGAACTTGATGCGCTCAGAACTGAGATCTTAGGGCGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTGGCACGTAGAAGTTTTGTATTGCTTCGGAGGTCAGCTATATATCTGCAGTCTGCATGTAGAGGTCAACTTGCTCGAGAAGTATTTGAGGGCTTGAGGAGAGAAGCTTCTTCCTTAATGATTCAAAGGAATTTGCGGATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTGCTCTTCAGCTATTTCTATTCAAACTGGAGTGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCAGTCTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAGCTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAGGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGTTTCAATTGAAAGAAACAAAAGCGATGTTTGAGAAGGAACGCGAAGCTGCAAAGAAGGCTGCAGATATTATTCCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAATGATTGAGAAAATTTCCAGTGAAAATGAAAAGCTCAAGGCGTTGGTAAATTCACTGGAACAGAAAATTGATGAAACAGAGAAAAAGTATGAAGAGGCAAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGAGGCAGAAACAAAAATTATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTGAAAGCACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGAAACTTGAGAACGGTAACCATTCAATTGAAGATAACAGAATCGATGAGCAGTTTGTAACACCCGTGAAAACACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCGCATTTTGAACATCAACAAGAGAATGTTGATGCTCTCGTCAGTAGTGTCATGAATAACATTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTTCTTCACTGGAAATCTTTTGAAGCTGAAAAAACAAGTGTATTTGATCGCCTTATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTGGCCTATTGGTTGTCAAACACATCCGCACTACTATTTTTGCTTCAACGGAGCTTGAAAGCTCCTGGTGCTCCCCGAAAACCTCCACCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCATCTCCTTCTTCCAACAATCTTGGATCTGCACTTAAGGTCGTGCGTCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACAGCATATGTCGAAAAAATATTTGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCTTGTGTATCCAAGTTCCGCAAATTCTTATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTCCGTCGAGAATGTTGTACATTCAGCAATGGGGAATACGTAAAATCTGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTAAAACACATAAGACAAGCTGTTGGTTTCTTGGTTATACATCAGAAATACAGAATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGACAACTATAACACTCGAAGCGTATCGCCCGATGTAATATCTAGTATGAGAGTGCTCATGACGGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCCTATTGGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTATCAAACTCGCTGCAAGAAAAAGACTTCTCGGGCGTGAAGCCTGCCGACGAACTACTCGAGAACCCAGCCTTCCAATTTTTACACGAGTAA 4422 41.14 MASTTGLVVGSIVWLEDSEEAWIEGEVVEVRGEEIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADSAYRHFPTILLLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQGGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCYELDGIDDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTYKNHRRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLTASKCYFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLEGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSAIYLQSACRGQLAREVFEGLRREASSLMIQRNLRMHLCRKAYKEKCSSAISIQTGVRGMAARNELRFRRQSKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQFQLKETKAMFEKEREAAKKAADIIPIVKEVPVLDNAMIEKISSENEKLKALVNSLEQKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNIESENQILRQQTFLKAPVKKMADHLPIAAAEKLENGNHSIEDNRIDEQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALVSSVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAPGAPRKPPPSTSLFGRMTMGFRSSPSSNNLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE 1473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26861807 26879039 + Lsi09G018080.1 Lsi09g01808 671421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01808 1473 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
Lsi09g01808 1473 SMART DIL_2 1294 1401 IPR002710 -
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 790 819 IPR000048 GO:0005515
Lsi09g01808 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 890 IPR027417 -
Lsi09g01808 1473 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PANTHER MYOSIN 1287 1471 - -
Lsi09g01808 1473 PANTHER MYOSIN 6 1286 - -
Lsi09g01808 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 792 IPR027417 -
Lsi09g01808 1473 Gene3D - 446 630 - -
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 744 768 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 741 763 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 812 834 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 837 859 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 860 882 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 789 811 IPR000048 GO:0005515
Lsi09g01808 1473 SMART iq_5 764 786 IPR000048 GO:0005515
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 838 867 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 Pfam IQ calmodulin-binding motif 744 762 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam IQ calmodulin-binding motif 793 811 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam IQ calmodulin-binding motif 840 859 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam IQ calmodulin-binding motif 766 783 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam IQ calmodulin-binding motif 863 882 IPR000048 GO:0005515
Lsi09g01808 1473 Coils Coil 884 950 - -
Lsi09g01808 1473 CDD MYSc_Myo11 76 727 IPR036018 -
Lsi09g01808 1473 ProSiteProfiles Myosin motor domain profile. 62 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PANTHER MYOSIN-14 6 1286 - -
Lsi09g01808 1473 Pfam DIL domain 1295 1398 IPR002710 -
Lsi09g01808 1473 Gene3D Myosin VI head, motor domain, U50 subdomain 319 608 - -
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 813 842 IPR000048 GO:0005515
Lsi09g01808 1473 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PRINTS Myosin heavy chain signature 489 517 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 Gene3D - 841 889 - -
Lsi09g01808 1473 Gene3D - 792 840 - -
Lsi09g01808 1473 Gene3D - 742 791 - -
Lsi09g01808 1473 PANTHER MYOSIN-14 1287 1471 - -
Lsi09g01808 1473 CDD MyosinXI_CBD 1117 1442 IPR037975 GO:0007015
Lsi09g01808 1473 Gene3D - 259 317 - -
Lsi09g01808 1473 Coils Coil 979 1055 - -
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Lsi09g01808 1473 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Lsi09g01808 1473 Pfam Myosin head (motor domain) 64 727 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi09g01808 1473 Gene3D Kinesin motor domain 65 669 IPR036961 -
Lsi09g01808 1473 ProSiteProfiles Dilute domain profile. 1166 1419 IPR002710 -
Lsi09g01808 1473 Gene3D - 673 740 - -
Lsi09g01808 1473 SMART MYSc_2a 57 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00610 Lsi-Chr2:5413250 Lsi09g01808 Lsi-Chr9:26861807 2.76E-06 transposed
Lsi02g02634 Lsi-Chr2:32755926 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
Lsi04g00789 Lsi-Chr4:7408733 Lsi09g01808 Lsi-Chr9:26861807 2.79E-104 transposed
Lsi04g00790 Lsi-Chr4:7418949 Lsi09g01808 Lsi-Chr9:26861807 2.09E-18 transposed
Lsi04g01280 Lsi-Chr4:20201696 Lsi09g01808 Lsi-Chr9:26861807 7.07E-127 transposed
Lsi06g00306 Lsi-Chr6:3499595 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
Lsi08g00830 Lsi-Chr8:16705509 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
Lsi11g00416 Lsi-Chr11:4374341 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
Lsi05g01786 Lsi-Chr5:25176357 Lsi09g01808 Lsi-Chr9:26861807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01808 K10357 - csv:101208630 2763.02