Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01813 ATGGACTTGGATGGCATCGAAGGTGTGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAATCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAGTCACTTAAACTGGCTTGTAAATTCTGCACATTTGGGTGTCAGGAGATATTGCCTTACTACAGCAAACTCAAACACGAATCTGCCTGTTACTATAGACCATATACCTGCCCATATGCTGGATCAGACTGCCCAGTTGACGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTTGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCACTTTGAAGCCTTTCAACTGGGTATGGCACCAGTTTATATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGAAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAATCACAAGAAAGTCAGAGACAGCCACGACGGCCTCATTATACAGCGAAACATGGCACTCTTCTTTTCGGGAGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.79 MDLDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26927415 26930988 - Lsi09G018130.1 Lsi09g01813 671426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01813 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Lsi09g01813 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 96 IPR013083 -
Lsi09g01813 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Lsi09g01813 304 CDD Sina 167 295 - -
Lsi09g01813 304 CDD RING-HC_SIAHs 51 89 - -
Lsi09g01813 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Lsi09g01813 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 8 302 - -
Lsi09g01813 304 SUPERFAMILY RING/U-box 47 93 - -
Lsi09g01813 304 SUPERFAMILY TRAF domain-like 106 298 - -
Lsi09g01813 304 PANTHER UBIQUITIN LIGASE SINAT3 8 302 - -
Lsi09g01813 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi09g01813 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00102 Lsi-Chr5:1766969 Lsi09g01813 Lsi-Chr9:26927415 0 dispersed
Lsi05g00103 Lsi-Chr5:1771572 Lsi09g01813 Lsi-Chr9:26927415 3.81E-174 dispersed
Lsi09g00815 Lsi-Chr9:9337291 Lsi09g01813 Lsi-Chr9:26927415 2.71E-144 dispersed
Lsi09g01813 Lsi-Chr9:26927415 Lsi10g00990 Lsi-Chr10:14238614 1.46E-146 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01813 K04506 - csv:101209363 646.736