Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01839 ATGATGAGAGAGAGAAGAAATTGTGTTTTTGTATCATTAGTGGGGATAGCATTATTGATGAGTTTATGCATTGTGAGAGGTGAAAATACATTACAATCACCAGTGAAGCTAATATGGCATTATTACAAGCTCAACACAAGTTGCCCTGATGCTGAGGAATACATAAAACATCAAGTCAATTTGTTTTGGCAAAAGGATAAAACCATCACTGCCAAGTTCCTCCGTTTGCTCTCTGCAGATTGCCTTTCCAAAAATGGTTGTGATGGTTCGATACTTCTTGATGGTCCAAATTCAGAGAAAAATGCACCACAAAATCAAGGCCTTGGAGGGTTTGAAGAGATTGACAAGATCAAAATTGTACTTGAAGACAGATGTCCCGGCGTTGTTTCTTGTACAGATATTTTGAATCTAGCCACTAGAGATGCTGCCCGTTTGGCAGGTGCACCATCTTATCCAGTGTTTACTGGAAGGAGGGATGGTTTTACAAGTAGCATTGATGCAGTGGATTTTCCATCTCCCTCTATATCATGGCAAGAAGGACTCAATTATTTCCAATCTAAAGGTCTTGATGTTTTGGACATGGCAACACTGCTAGGTGCACATTCAATGGGAAAAACACACTGTCGATACATCATGGATAGGCTATACAATTTCAAAGGCACAAAAAAACCAGATCCATCAATGAACAAATCATTCTTAAAAGAGCTTCAAAAGAAATGCCCCAAAAATTCAAAAACTGACTCAATTGTGAATCTAACACCAAAATCTGGAAATGACTATCAATTCACAAGTCTTTACTACTCGAAAATCCTTTCGAAAAAGGCGGTCCTCGGTATCGATCAACAGCTTCTTTTCGGTAACGACACAAATGAAATTGTCCAGGAATTTGCTCCAAAATCTGGATTTGAAGACTTCCGTCGCTCCTTTGCTTTGTCCATGAGTAGGATGGGAAATATCAAGGTTTTGGCCGGAAAAGATGGCGAGATTCGACGACATTGTCGGCAAAGAAACTAG 1014 39.55 MMRERRNCVFVSLVGIALLMSLCIVRGENTLQSPVKLIWHYYKLNTSCPDAEEYIKHQVNLFWQKDKTITAKFLRLLSADCLSKNGCDGSILLDGPNSEKNAPQNQGLGGFEEIDKIKIVLEDRCPGVVSCTDILNLATRDAARLAGAPSYPVFTGRRDGFTSSIDAVDFPSPSISWQEGLNYFQSKGLDVLDMATLLGAHSMGKTHCRYIMDRLYNFKGTKKPDPSMNKSFLKELQKKCPKNSKTDSIVNLTPKSGNDYQFTSLYYSKILSKKAVLGIDQQLLFGNDTNEIVQEFAPKSGFEDFRRSFALSMSRMGNIKVLAGKDGEIRRHCRQRN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27215644 27219525 - Lsi09G018390.1 Lsi09g01839 671452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01839 337 PANTHER PEROXIDASE 61-RELATED 16 335 - -
Lsi09g01839 337 PRINTS Plant peroxidase signature 48 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 Pfam Peroxidase 57 297 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 Gene3D Peroxidase, domain 2 171 316 - -
Lsi09g01839 337 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 CDD secretory_peroxidase 36 334 IPR033905 GO:0004601|GO:0042744
Lsi09g01839 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Lsi09g01839 337 SUPERFAMILY Heme-dependent peroxidases 43 337 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 Gene3D - 41 337 - -
Lsi09g01839 337 PANTHER PEROXIDASE 25-RELATED 16 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01839 337 ProSiteProfiles Plant heme peroxidase family profile. 36 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00127 Lsi-Chr3:1773109 Lsi09g01839 Lsi-Chr9:27215644 1.46E-59 dispersed
Lsi09g01839 Lsi-Chr9:27215644 Lsi11g01605 Lsi-Chr11:24387031 9.58E-68 dispersed
Lsi09g01839 Lsi-Chr9:27215644 Lsi01g00641 Lsi-Chr1:5166953 1.05E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01839 K00430 - csv:101213667 583.178