Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01848 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAAAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGCCTTACAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCCAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTTTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTCCCTACATCATACTCAGGTAGTGCACTTGCATGCAGACCGACAAAGTTGAGCACATCATACAAAAAGCCCAGGATTGAGATGGTTGACGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 46.08 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLTANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGSALACRPTKLSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27319195 27321930 + Lsi09G018480.1 Lsi09g01848 671461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01848 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi09g01848 237 Gene3D Classic Zinc Finger 1 92 - -
Lsi09g01848 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lsi09g01848 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi09g01848 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Lsi09g01848 237 MobiDBLite consensus disorder prediction 116 135 - -
Lsi09g01848 237 CDD Bbox1_BBX-like 5 47 - -
Lsi09g01848 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lsi09g01848 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lsi09g01848 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lsi09g01848 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Lsi09g01848 237 CDD Bbox1_BBX-like 56 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01848 - - - csv:101215327 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00290 Lsi-Chr7:3106367 Lsi09g01848 Lsi-Chr9:27319195 2.15E-44 dispersed
Lsi09g01848 Lsi-Chr9:27319195 Lsi10g00408 Lsi-Chr10:6209617 7.96E-36 dispersed
Lsi10g00420 Lsi-Chr10:6364840 Lsi09g01848 Lsi-Chr9:27319195 1.84E-13 dispersed
Lsi09g01848 Lsi-Chr9:27319195 Lsi08g01348 Lsi-Chr8:21779307 1.22E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g01688 . 1 335 Orphan Transcription Factor Family AT5G61850 61.6 1.6e-93 340.1
Lsi09g01848 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 4.4e-61 231.1
Lsi07g00290 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25978 PF00643 zf-B_box 5.70E-08 No_clan Lsi TF