Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01848 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAAAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGCCTTACAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCCAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTTTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTCCCTACATCATACTCAGGTAGTGCACTTGCATGCAGACCGACAAAGTTGAGCACATCATACAAAAAGCCCAGGATTGAGATGGTTGACGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 46.08 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLTANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGSALACRPTKLSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27319195 27321930 + Lsi09G018480.1 Lsi09g01848 671461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01848 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi09g01848 237 Gene3D Classic Zinc Finger 1 92 - -
Lsi09g01848 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lsi09g01848 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi09g01848 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Lsi09g01848 237 MobiDBLite consensus disorder prediction 116 135 - -
Lsi09g01848 237 CDD Bbox1_BBX-like 5 47 - -
Lsi09g01848 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lsi09g01848 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lsi09g01848 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lsi09g01848 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Lsi09g01848 237 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00290 Lsi-Chr7:3106367 Lsi09g01848 Lsi-Chr9:27319195 2.15E-44 dispersed
Lsi09g01848 Lsi-Chr9:27319195 Lsi10g00408 Lsi-Chr10:6209617 7.96E-36 dispersed
Lsi10g00420 Lsi-Chr10:6364840 Lsi09g01848 Lsi-Chr9:27319195 1.84E-13 dispersed
Lsi09g01848 Lsi-Chr9:27319195 Lsi08g01348 Lsi-Chr8:21779307 1.22E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25978 PF00643 zf-B_box 5.70E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01848 - - csv:101215327 462.225