Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01853 ATGGAAGTGCAAGATCATGGTCACATAATTGAAGTGTGTGGAGATGTGCAAGCTGTAGGGCCTAGCATTGTGGGAAGTAAAATTTGTGGGGATGCACCTTCTTGTGGATTTTCTGATGCAAAAAACAGTTCAAAAGATGCGAAGGAGCGATCTGCGTCCATGCGGAAGCTTTGCATAGCAGTCGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCTACTCCGCGTCAGTCATATGGTTTCTTCCGCATTGAAATACTTGGTGCCCTCGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATTGTCCGACTTATCAATGGTCCGGGAGAAGTTAAGGGCTTGCTCATGTTTGCTGTTTCTACGTTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGACCATGGTCATGGCGGCCACAAACATGGCGACGAAGATCATACACATCGTCATGGAATAAGTGTGACCATGCACCACCACCACCATGAAGAGAAGGGAGCTGCCAGCGATGGTGTTGAGCACCACCATCATCATCATGCACACAAGGAATCAGTAACTACACCCTTACTTGAGAGCTATGGTGATGACGAAAATCATTCAGGAAAGGTTATCAAGACGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGTGTAATGATCGGCGGGGCAATCATATGGTATAAACAAGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATTCTGGAGGTTTTGATGGAGAGCACACCGCGAGAGGTGGATGCAACAAAGCTGGAAAAGGGTTTGTGCGAGATGGACGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTGGGGAAGATTTTATTGGCATGCCATGTTATAATAAAGCCAGATGCAAATGCAGACATGGTATTGGACAAGGTTATTGATTATATTAGAAGAGAGTACAACATCAGCCATGTCACCATTCAAATAGAGCGCCAGTAG 1263 44.5 MEVQDHGHIIEVCGDVQAVGPSIVGSKICGDAPSCGFSDAKNSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHDHGHGGHKHGDEDHTHRHGISVTMHHHHHEEKGAASDGVEHHHHHHAHKESVTTPLLESYGDDENHSGKVIKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKQEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMDEVVAIHELHIWAITVGKILLACHVIIKPDANADMVLDKVIDYIRREYNISHVTIQIERQ 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27341325 27346824 + Lsi09G018530.1 Lsi09g01853 671466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01853 420 Pfam Cation efflux family 58 341 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lsi09g01853 420 MobiDBLite consensus disorder prediction 192 242 - -
Lsi09g01853 420 Gene3D Cation efflux protein transmembrane domain 53 340 IPR027469 -
Lsi09g01853 420 TIGRFAM CDF: cation diffusion facilitator family transporter 54 420 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lsi09g01853 420 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 4 419 - -
Lsi09g01853 420 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 348 418 IPR036837 -
Lsi09g01853 420 SUPERFAMILY Cation efflux protein transmembrane domain-like 51 342 IPR027469 -
Lsi09g01853 420 PANTHER METAL TOLERANCE PROTEIN A1 4 419 - -
Lsi09g01853 420 MobiDBLite consensus disorder prediction 184 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01330 Lsi-Chr2:17784826 Lsi09g01853 Lsi-Chr9:27341325 3.19E-102 dispersed
Lsi03g01433 Lsi-Chr3:25284935 Lsi09g01853 Lsi-Chr9:27341325 3.91E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01853 K14689 - csv:101213602 710.679