Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01874 | ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAACTTCAACAACGCCCTGATCTCCACCTAGATTCTCCTCCAAGTTCCGACCATGTCAACCACTTCAACGGCAGCGGTGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCTAGGGGTCGGCCGGCCGGCTCCAAAAACAAGCCGAAGCCGCCCGTGATCATCACGCGCGAGAGCGCCAATACGCTCCGAGCTCATATCTTGGAGGTCGGTGGTGGATGCGACGTCTTCGAGGCGGTAGCCGGCTATGCACGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGAATTGTGAATAATGTTAGCTTGCGACAGCCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCTACCAGTCTCACGATTTTCTTAGCCGGAGGACAAGGACAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATTGCGTCGGGGCCGGTCATCGTCATAGCATCGTCGTTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCAGGTGGCGGTGACGGTGATGGAGGTGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA | 759 | 55.6 | MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 27553548 | 27555148 | - | Lsi09G018740.1 | Lsi09g01874 | 671487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01874 | 252 | MobiDBLite | consensus disorder prediction | 20 | 68 | - | - | |
Lsi09g01874 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 13 | 249 | - | - | |
Lsi09g01874 | 252 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 75 | 208 | - | - | |
Lsi09g01874 | 252 | CDD | DUF296 | 79 | 162 | IPR005175 | - | |
Lsi09g01874 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 79 | 192 | IPR005175 | - | |
Lsi09g01874 | 252 | ProSiteProfiles | PPC domain profile profile. | 75 | 211 | IPR005175 | - | |
Lsi09g01874 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 13 | 249 | IPR014476 | GO:0003680 | |
Lsi09g01874 | 252 | MobiDBLite | consensus disorder prediction | 205 | 240 | - | - | |
Lsi09g01874 | 252 | Gene3D | - | 78 | 208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01210 | Lsi-Chr7:17634644 | Lsi09g01874 | Lsi-Chr9:27553548 | 1.07E-91 | dispersed | |
Lsi09g01874 | Lsi-Chr9:27553548 | Lsi09g01903 | Lsi-Chr9:27888660 | 9.31E-63 | dispersed | |
Lsi05g01920 | Lsi-Chr5:26394918 | Lsi09g01874 | Lsi-Chr9:27553548 | 1.04E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01874 | - | - | csv:101203160 | 457.218 |