Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01874 ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAACTTCAACAACGCCCTGATCTCCACCTAGATTCTCCTCCAAGTTCCGACCATGTCAACCACTTCAACGGCAGCGGTGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCTAGGGGTCGGCCGGCCGGCTCCAAAAACAAGCCGAAGCCGCCCGTGATCATCACGCGCGAGAGCGCCAATACGCTCCGAGCTCATATCTTGGAGGTCGGTGGTGGATGCGACGTCTTCGAGGCGGTAGCCGGCTATGCACGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGAATTGTGAATAATGTTAGCTTGCGACAGCCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCTACCAGTCTCACGATTTTCTTAGCCGGAGGACAAGGACAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATTGCGTCGGGGCCGGTCATCGTCATAGCATCGTCGTTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCAGGTGGCGGTGACGGTGATGGAGGTGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 759 55.6 MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27553548 27555148 - Lsi09G018740.1 Lsi09g01874 671487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01874 252 MobiDBLite consensus disorder prediction 20 68 - -
Lsi09g01874 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13 249 - -
Lsi09g01874 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 208 - -
Lsi09g01874 252 CDD DUF296 79 162 IPR005175 -
Lsi09g01874 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 192 IPR005175 -
Lsi09g01874 252 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
Lsi09g01874 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 13 249 IPR014476 GO:0003680
Lsi09g01874 252 MobiDBLite consensus disorder prediction 205 240 - -
Lsi09g01874 252 Gene3D - 78 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01210 Lsi-Chr7:17634644 Lsi09g01874 Lsi-Chr9:27553548 1.07E-91 dispersed
Lsi09g01874 Lsi-Chr9:27553548 Lsi09g01903 Lsi-Chr9:27888660 9.31E-63 dispersed
Lsi05g01920 Lsi-Chr5:26394918 Lsi09g01874 Lsi-Chr9:27553548 1.04E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01874 - - csv:101203160 457.218