Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01880 ATGGCCTACCGACCCAACCATTTCCCCAACGCTTTTCTCAATCATTATTCTCCCCAGGCCTCCGCCATGAAAATAAAGCAGAGAAAAGCTCAACAAATTCCCCTTCTTCCAATAAAAAAACAGAAAAGGATGCTGAACCAACCTGGAAAATGGGTGGTGCTGGTGGCGGCGATATGGATTCAGGCATTTGCCGGCACAAATTTTGATTTCCCCTCTTATTCTTCCGATCTGAAGGCCGCTCTGGGGATGTCGCAGGTGGAGCTCAACTATCTGGCGGTGGCTTCCGACCTTGGCAAGGCCTTCGGGTGGTGCTCTGGTGTCGCTCTCTTGTATTTTCCTTTGTGGGTGGTGATGTTCATGGCTGCTTCCATGGGGTTTCTTGGCTATGGCCTCCAATGGCTTCTCCTTCTAAGGATTGTCTCTCTGCCTTACTCCATGGTTTATATTCTCTGCTTGATGGCTGGATGTAGTATTTGCTGGTTCAACACGGTCTGCTATGTCTCATGTATCCAAAATTTTCCAGCCAACCGTGCGCTTGCATTGTCCTTGATTGTCAGCTTCAATGGCGTCAGTGCAGCTCTATACACCCTAATTTCCAATGCAATAGACCCTAATGATGCCAGTTTGTACCTCTTCCTAAATGCACTGGTTCCTCTCATCATCTCTGTTGTTGCCCTCCTCCCAATCCTTCATCAGCCACCGGTTCAGCCATCCTCTGCTGATGCCATCCGCCATGACTCCCTCATCTTCATATGCTTATACATCGCGGCTGTTATCACAGGGTTGTACTTAATCACTTTCAATTCCATGCCTTCCAACAAATACGGGTCCCAAATTCTGTTAGCAGGGGCTTTTGCCCTTTTACTAGTTCCGCTTTGTTTGCCAGGAATTCTGAGTACACGCAGGTGGTTGGTTCGGATCATATCCACCAGCTTGAGTTGTCTTATTCACTCTAGATTTAACCTTGTTGATCATGAGCTTCACCAGGAGCTCATCGCTGTTGGAACAGAACGAAATAGCATGAAGGTCACCACCCCTTTTGATTCTAAAGAGAAGGAAAGCATTTCAAGGAAGGTGATGGAGAAAGAAAACTTGGTAGTGCTTGAAGAAGAGCATTCGGCTACGATGCTCATGCGACGGTTGGACTTTTGGCTCTATTATGTTGCATACTTTTGTGGTGGCACGATCGGGTTGGTTTACAGCAACAATCTTGGGCAAATTGCACAGTCGCTTGGATATAGTTCGTCAACAAGTTCACTTGTAACACTCTACTCTTCTTGCTCCTTCTTTGGGCGGTTAATCTCAGCAACCCCAGATTTCATGCGTGAAAAGGTGCACTTCGCCAGAACAGGGTGGCTAGCCATTGCACTGGTGCCAACTCCAATCGCCTTCATTTTACTTGCTGCATCAGGCAGCAAAGTCGCATTACAAGCCGGCACTGGCTTGATCGGCCTAAGCTCGGGATTCATATTCTCAGCCTCAGTCTCAATCACATCAGAGTTATTCGGACCGAACAGTTCAGGGGTCAACCACAACATCCTCATCACTAACATCCCTCTTGGTTCGTTCCTCTACGGCGTCCTGGCGGCAGTGGCGTACGATTCAAACGCCGGAAGTTCACATCAGACGGCTGCGCTGGGGGACGCGGTAGTGTGCATCGGCCAGAATTGCTATCTGCAGACGTTCGTATGGTGGGCTTGCATCTCCATCTTCGGCCTGGCTTCTAGCTTCTTGCTTTTCCGACGGACGAGACCGGCTTACGACCGCCATTACGAGAGTAACCTAAGCAAGATGCAGCCATTTTAG 1806 48.73 MAYRPNHFPNAFLNHYSPQASAMKIKQRKAQQIPLLPIKKQKRMLNQPGKWVVLVAAIWIQAFAGTNFDFPSYSSDLKAALGMSQVELNYLAVASDLGKAFGWCSGVALLYFPLWVVMFMAASMGFLGYGLQWLLLLRIVSLPYSMVYILCLMAGCSICWFNTVCYVSCIQNFPANRALALSLIVSFNGVSAALYTLISNAIDPNDASLYLFLNALVPLIISVVALLPILHQPPVQPSSADAIRHDSLIFICLYIAAVITGLYLITFNSMPSNKYGSQILLAGAFALLLVPLCLPGILSTRRWLVRIISTSLSCLIHSRFNLVDHELHQELIAVGTERNSMKVTTPFDSKEKESISRKVMEKENLVVLEEEHSATMLMRRLDFWLYYVAYFCGGTIGLVYSNNLGQIAQSLGYSSSTSSLVTLYSSCSFFGRLISATPDFMREKVHFARTGWLAIALVPTPIAFILLAASGSKVALQAGTGLIGLSSGFIFSASVSITSELFGPNSSGVNHNILITNIPLGSFLYGVLAAVAYDSNAGSSHQTAALGDAVVCIGQNCYLQTFVWWACISIFGLASSFLLFRRTRPAYDRHYESNLSKMQPF 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27607407 27610590 - Lsi09G018800.1 Lsi09g01880 671493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01880 601 PANTHER NODULIN-LIKE/MFS TRANSPORTER 46 594 - -
Lsi09g01880 601 Pfam Nodulin-like 50 295 IPR010658 -
Lsi09g01880 601 SUPERFAMILY MFS general substrate transporter 250 586 IPR036259 -
Lsi09g01880 601 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 46 594 - -
Lsi09g01880 601 SUPERFAMILY MFS general substrate transporter 43 231 IPR036259 -
Lsi09g01880 601 Gene3D MFS general substrate transporter like domains 342 574 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01224 Lsi-Chr2:16037077 Lsi09g01880 Lsi-Chr9:27607407 5.36E-57 dispersed
Lsi07g00763 Lsi-Chr7:8305771 Lsi09g01880 Lsi-Chr9:27607407 0 dispersed
Lsi09g01880 Lsi-Chr9:27607407 Lsi07g00429 Lsi-Chr7:4591177 6.25E-61 dispersed
Lsi09g01880 Lsi-Chr9:27607407 Lsi10g00482 Lsi-Chr10:6946048 1.78E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01880 - - csv:101222963 1063.14