Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01887 ATGGGCGGCGGAGGTGAAGGAACGACGCTGGAATTCACTCCGACGTGGGTTGTAGCCGCCGTCTGTACCGTCATCGTCGCCATTTCCCTCGCCTTAGAGCGCCTCCTTCACTTCCTCGGCAAATACCTCAAGAGCAAGAATCAGAAGCCGCTCAATGAAGCTCTTCAGAAAGTTAAAGAAGAATTGATGCTTTTGGGGTTTATTTCGCTTCTGCTCACTGTATTTCAAGGCGCCATCTCTAAATTGTGTGTTCCTGAGAGTTTAACTGAGCATTTACTTCCGTGTGATCTGAAGGATAAAGCTAAAGCTGAACATGGTTCGCCTTCCGGTGAAACTGGTTCGTCAACGACGACGCATTTTCAAACGTTCTTTGTTTCGAGTATTTCTGGTACGGCCAGGCGCCTTCTTTCTGAGGGATCGGCTTCACAGACTGGTTATTGTGCCAAAAAGAATAAGGTGCCATTGCTATCACTTGAAGCATTGCATCATCTACATATTTTTATCTTCATCCTAGCTATCGTCCATGTGACATTTTGCGTTCTCACTGTAGTTTTTGGAGGATTGAAGATTCGTCAGTGGAAGCATTGGGAGGATTCTATTGCAAAAGAGAATTATGATACTGAACACGTTCTAAAACCAAAAGTCACCCATGTCCATCAACATGCTTTTATCAAGGACCACTTTTTGGGCTTTGGTAAAGATTCAGCTCTTCTTGGTTGGTTGCATTCCTTCCTCAAGCAATTTTATGCTTCTGTAACAAAATCAGATTATGCAACGTTACGGCTTGGTTTCATTATGACACACTGCAGGGGAAACCCGAAGTTTAATTTTCACAAGTACATGATACGTGCCCTTGAAGATGACTTCAAGCATGTTGTTGGTATCAGGCAAGTAATATCTGGAACTGGAATTGGTATCTTTGGATATTCGTGGTTGTCTTCTTGTTCCTTAATGTTAGTGCTTCTGCTCGCTGTGGGAACGAAGCTGGAACATGTGATAACCCAGCTGGCTCATGAGGTTGCAGAGAAGCATGTAGCAATCGAAGGTGATTTAGTAGTCCAACCGTCTGATGATCACTTTTGGTTTCAGCGACCCCGTATTGTTCTCTTCTTGATCCACTTTATACTTTTCCAAAACGCTTTTGAGATTGGATTTTTCTTCTGGATATGGGTTCAATATGGCTTCGACTCGTGCATCATGGGACAAGTCCGCTATATCATTCCAAGGCTCATCATTGGGGTGTTTGTTCAGGTTCTTTGCAGTTACAGCACCCTACCGCTCTACGCCATTGTCACTCAGAAAGCAATTTTTGATGAACATGTACAAGTAGGCCTAGTTGGTTGGGCTCAGAAGGTGAAGAAAAGAAAGGGACTTAGAGCAGCTGCTGATGGCTCCAGCCAAGGAGGCAAGGAAGGTGGTTCTACTGTGGGGATTCAACTGGGAAATGTTATGCGCAAGGCTTCTGCACCTCATGAAATTAAGCCTGATGACTCCAAATCAAATGATCTGCCTTAG 1515 44.29 MGGGGEGTTLEFTPTWVVAAVCTVIVAISLALERLLHFLGKYLKSKNQKPLNEALQKVKEELMLLGFISLLLTVFQGAISKLCVPESLTEHLLPCDLKDKAKAEHGSPSGETGSSTTTHFQTFFVSSISGTARRLLSEGSASQTGYCAKKNKVPLLSLEALHHLHIFIFILAIVHVTFCVLTVVFGGLKIRQWKHWEDSIAKENYDTEHVLKPKVTHVHQHAFIKDHFLGFGKDSALLGWLHSFLKQFYASVTKSDYATLRLGFIMTHCRGNPKFNFHKYMIRALEDDFKHVVGIRQVISGTGIGIFGYSWLSSCSLMLVLLLAVGTKLEHVITQLAHEVAEKHVAIEGDLVVQPSDDHFWFQRPRIVLFLIHFILFQNAFEIGFFFWIWVQYGFDSCIMGQVRYIIPRLIIGVFVQVLCSYSTLPLYAIVTQKAIFDEHVQVGLVGWAQKVKKRKGLRAAADGSSQGGKEGGSTVGIQLGNVMRKASAPHEIKPDDSKSNDLP 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27665414 27671744 - Lsi09G018870.1 Lsi09g01887 671500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01887 504 PANTHER MLO-LIKE PROTEIN 2 492 - -
Lsi09g01887 504 Pfam Mlo family 8 464 IPR004326 GO:0006952|GO:0016021
Lsi09g01887 504 PANTHER MLO-LIKE PROTEIN 1 2 492 IPR004326 GO:0006952|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01324 Lsi-Chr4:21042641 Lsi09g01887 Lsi-Chr9:27665414 1.15E-81 dispersed
Lsi09g01887 Lsi-Chr9:27665414 Lsi10g00757 Lsi-Chr10:10378636 6.01E-115 dispersed
Lsi09g01887 Lsi-Chr9:27665414 Lsi02g01429 Lsi-Chr2:19828608 3.33E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01887 K08472 - csv:101211868 894.804