Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01890 ATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTGAGAGAGAGTACAACAAACAAAAGAGTTGCTTGCTTCCTGTGAAAGCATTGAATGGCAGGAAGGTGGATGAATTGGACAAAGCTATAGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGAAGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCCGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCTGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACTATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 690 43.77 MPSAQDPFYVVKDEIQESEREYNKQKSCLLPVKALNGRKVDELDKAIAVAARDPSWYGIDEAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27715983 27720666 + Lsi09G018900.1 Lsi09g01890 671503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01890 229 CDD SNARE_Qc 140 197 - -
Lsi09g01890 229 Pfam Syntaxin 6, N-terminal 39 82 IPR015260 GO:0016020|GO:0048193
Lsi09g01890 229 ProSitePatterns Syntaxin / epimorphin family signature. 143 182 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi09g01890 229 SUPERFAMILY t-snare proteins 5 83 IPR010989 GO:0016020|GO:0016192
Lsi09g01890 229 Pfam SNARE domain 174 225 IPR000727 -
Lsi09g01890 229 Gene3D - 144 208 - -
Lsi09g01890 229 SUPERFAMILY SNARE fusion complex 136 199 - -
Lsi09g01890 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Lsi09g01890 229 SMART tSNARE_6 132 199 IPR000727 -
Lsi09g01890 229 PANTHER SYNTAXIN-61 6 228 - -
Lsi09g01890 229 Gene3D - 32 87 - -
Lsi09g01890 229 PANTHER SYNTAXIN 6 228 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01890 Lsi-Chr9:27715983 Lsi02g01877 Lsi-Chr2:24587361 1.84E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01890 K08500 - csv:101212527 330.872