Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01900 ATGACCCACACCCACAGAATTGGCCTACATCAAGAGAGCTTGATGAGTGGCGGCGAAGGCGTAGGCGGCGGTGTTGGCCACGGCGGAGGGCCCTGCGGCGCGTGCAAGTTTTTGAGGAGAAAATGTGTGAAAGGGTGCATTTTTGCACCCTACTTCGACTCGGACCAAGGCGCCGCCCATTTCGCCGCCGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCGTGCGTTACTCTTTGTTACGAGGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCCACCTTGCAGCGGCTATTTCCGCCGCCGCTACACAACCCGTCACTGCCCACTCGCGACACTCCGCTCCCGGAAACGATACCGGGCTCCGACATGGGCTTGCTGCCCAACTTTCCAATGCTCGTTGACCCCCTCCAAACTCAGCTGGGTTATAATGAAATGACAAATAGCTTTCTGAATCCATTTGATTATCAAGATCAGATGGATGAAGATGGTGATCTTCAATCTTTGGCTCGAGAATTCGTTTCGAGGTACTTGCCCGGAGTACGATTCCGGCCGCCATGCTCACAGATTTAA 693 53.82 MTHTHRIGLHQESLMSGGEGVGGGVGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLSTLQRLFPPPLHNPSLPTRDTPLPETIPGSDMGLLPNFPMLVDPLQTQLGYNEMTNSFLNPFDYQDQMDEDGDLQSLAREFVSRYLPGVRFRPPCSQI 230
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 27833481 27836442 - Lsi09G019000.1 Lsi09g01900 671513
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01900 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 26 219 - -
Lsi09g01900 230 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Lsi09g01900 230 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
Lsi09g01900 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 219 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01004 Lsi-Chr5:17507404 Lsi09g01900 Lsi-Chr9:27833481 8.63E-45 dispersed
Lsi09g01900 Lsi-Chr9:27833481 Lsi02g01015 Lsi-Chr2:10457656 9.21E-37 dispersed
Lsi09g01900 Lsi-Chr9:27833481 Lsi09g01901 Lsi-Chr9:27864606 5.37E-44 tandem
Lsi02g02174 Lsi-Chr2:28249775 Lsi09g01900 Lsi-Chr9:27833481 1.74E-43 transposed
Lsi03g01564 Lsi-Chr3:26624536 Lsi09g01900 Lsi-Chr9:27833481 7.16E-46 transposed
Lsi04g00900 Lsi-Chr4:9058399 Lsi09g01900 Lsi-Chr9:27833481 5.49E-38 transposed
Lsi05g01964 Lsi-Chr5:26775277 Lsi09g01900 Lsi-Chr9:27833481 1.08E-29 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25981 PF03195 LOB 2.60E-36 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01900 - - csv:101220840 397.512