Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g01900 | ATGACCCACACCCACAGAATTGGCCTACATCAAGAGAGCTTGATGAGTGGCGGCGAAGGCGTAGGCGGCGGTGTTGGCCACGGCGGAGGGCCCTGCGGCGCGTGCAAGTTTTTGAGGAGAAAATGTGTGAAAGGGTGCATTTTTGCACCCTACTTCGACTCGGACCAAGGCGCCGCCCATTTCGCCGCCGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCGTGCGTTACTCTTTGTTACGAGGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCCACCTTGCAGCGGCTATTTCCGCCGCCGCTACACAACCCGTCACTGCCCACTCGCGACACTCCGCTCCCGGAAACGATACCGGGCTCCGACATGGGCTTGCTGCCCAACTTTCCAATGCTCGTTGACCCCCTCCAAACTCAGCTGGGTTATAATGAAATGACAAATAGCTTTCTGAATCCATTTGATTATCAAGATCAGATGGATGAAGATGGTGATCTTCAATCTTTGGCTCGAGAATTCGTTTCGAGGTACTTGCCCGGAGTACGATTCCGGCCGCCATGCTCACAGATTTAA | 693 | 53.82 | MTHTHRIGLHQESLMSGGEGVGGGVGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLSTLQRLFPPPLHNPSLPTRDTPLPETIPGSDMGLLPNFPMLVDPLQTQLGYNEMTNSFLNPFDYQDQMDEDGDLQSLAREFVSRYLPGVRFRPPCSQI | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 27833481 | 27836442 | - | Lsi09G019000.1 | Lsi09g01900 | 671513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g01900 | 230 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 19 | 26 | 219 | - | - | |
| Lsi09g01900 | 230 | ProSiteProfiles | LOB domain profile. | 30 | 132 | IPR004883 | - | |
| Lsi09g01900 | 230 | Pfam | Lateral organ boundaries (LOB) domain | 31 | 129 | IPR004883 | - | |
| Lsi09g01900 | 230 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 26 | 219 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01004 | Lsi-Chr5:17507404 | Lsi09g01900 | Lsi-Chr9:27833481 | 8.63E-45 | dispersed | |
| Lsi09g01900 | Lsi-Chr9:27833481 | Lsi02g01015 | Lsi-Chr2:10457656 | 9.21E-37 | dispersed | |
| Lsi09g01900 | Lsi-Chr9:27833481 | Lsi09g01901 | Lsi-Chr9:27864606 | 5.37E-44 | tandem | |
| Lsi02g02174 | Lsi-Chr2:28249775 | Lsi09g01900 | Lsi-Chr9:27833481 | 1.74E-43 | transposed | |
| Lsi03g01564 | Lsi-Chr3:26624536 | Lsi09g01900 | Lsi-Chr9:27833481 | 7.16E-46 | transposed | |
| Lsi04g00900 | Lsi-Chr4:9058399 | Lsi09g01900 | Lsi-Chr9:27833481 | 5.49E-38 | transposed | |
| Lsi05g01964 | Lsi-Chr5:26775277 | Lsi09g01900 | Lsi-Chr9:27833481 | 1.08E-29 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25981 | PF03195 | LOB | 2.60E-36 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g01900 | - | - | csv:101220840 | 397.512 |