Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01901 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCAGGAACTGCCAGTGCCGGCGGTGGTGTAGGTGGCGGCGGAGGAGGGCCATGTGGGGCTTGCAAGTTTTTGAGAAGAAAGTGTGTCCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCTCATTTCGCAGCGGTACACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTTCTCCTTCATATTCCGGTCCATAAACGTCTCGACGCTGTCGTCACGATTTGTTACGAAGCTCAAGCACGTCTCCGAGACCCTGTCTACGGTTGCGTTGCTCACATCTTCGCTCTTCAACAACAGTTTATTTATTTTTCCCTAGCGAGTTTACTGAAATCTAGAGCTATCAGTCCTTTGTTTGATTATTATCAAATCATTTCTTCGGCGGTTACTGCGTTATTCAGGAATTGGTCGGTCTATTGCCTTAAAGTTAAGCTTTTGATTAGAGAGACAAGAGTCATTTCCTACGTTTCCCCAATTTTTAGCTTCCTAAAAATATTTGATGTATACTTGGGAGTGGTGAGTTTACAAGCCGAGCTGACGTACCTTCAAGCCCATCTAGCAACGCTGGAGCTTCCGTCGCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGGGCAACAAACGCCGCTTTCCATCTCGGACCTGCCGTCGGCCTCCTCCCTGCCGGCAACTTACGACTTGTCGTCCCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGCGGCGGTTCATCAACGGCGGCAGGAGAGGGTGATCTTCAAGCCCTGGCCCGCGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGGCGCCTCGTCGCCGCAATCGCTCTCTAAGTGA 939 54.95 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQFIYFSLASLLKSRAISPLFDYYQIISSAVTALFRNWSVYCLKVKLLIRETRVISYVSPIFSFLKIFDVYLGVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPGQQTPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGAPPCSGASSPQSLSK 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27864606 27867596 + Lsi09G019010.1 Lsi09g01901 671514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01901 312 MobiDBLite consensus disorder prediction 206 224 - -
Lsi09g01901 312 Pfam Lateral organ boundaries (LOB) domain 29 116 IPR004883 -
Lsi09g01901 312 MobiDBLite consensus disorder prediction 260 312 - -
Lsi09g01901 312 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Lsi09g01901 312 MobiDBLite consensus disorder prediction 206 227 - -
Lsi09g01901 312 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 298 - -
Lsi09g01901 312 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01003 Lsi-Chr5:17497304 Lsi09g01901 Lsi-Chr9:27864606 2.44E-46 dispersed
Lsi05g01964 Lsi-Chr5:26775277 Lsi09g01901 Lsi-Chr9:27864606 2.12E-32 dispersed
Lsi09g01901 Lsi-Chr9:27864606 Lsi02g01015 Lsi-Chr2:10457656 6.66E-35 dispersed
Lsi09g01900 Lsi-Chr9:27833481 Lsi09g01901 Lsi-Chr9:27864606 5.37E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25982 PF03195 LOB 2.10E-35 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01901 K21994 - csv:101220603 195.282