Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01903 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGATCAAACCCCCGGAGCTAACAGAGATAGAGATCAGGACGAAAACCCCACCACGGCGGCGATGTCGGACAGCAAAGAATTGTCTAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATAACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTCGATTCCCTTGCCGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGCGCTACTGGAACTGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCTGGCGCTGTCATCACCTTACATGGCAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCACCGGCTCCCCCGGCCGCCTCTGGTCTGACTGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTTGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGCCTACCCATTGATGACGACGACGAAACATCACCGGCGGCGGAGATGGCGGGACAACAGGCAGCAGCACCGCCGCCGCCGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCGGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 843 57.06 MDGITPHNRPLPPFLSKDLHLHHGLFHHHQNSDDDQTPGANRDRDQDENPTTAAMSDSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEMAGQQAAAPPPPQLLGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27888660 27893903 + Lsi09G019030.1 Lsi09g01903 671516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01903 280 Gene3D - 94 224 - -
Lsi09g01903 280 MobiDBLite consensus disorder prediction 27 50 - -
Lsi09g01903 280 MobiDBLite consensus disorder prediction 215 247 - -
Lsi09g01903 280 MobiDBLite consensus disorder prediction 51 71 - -
Lsi09g01903 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Lsi09g01903 280 MobiDBLite consensus disorder prediction 27 85 - -
Lsi09g01903 280 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Lsi09g01903 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 280 IPR014476 GO:0003680
Lsi09g01903 280 CDD DUF296 95 206 IPR005175 -
Lsi09g01903 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Lsi09g01903 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 7 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00365 Lsi-Chr9:3772128 Lsi09g01903 Lsi-Chr9:27888660 5.98E-86 dispersed
Lsi09g01252 Lsi-Chr9:20189174 Lsi09g01903 Lsi-Chr9:27888660 2.41E-61 dispersed
Lsi09g01874 Lsi-Chr9:27553548 Lsi09g01903 Lsi-Chr9:27888660 9.31E-63 dispersed
Lsi05g01968 Lsi-Chr5:26816488 Lsi09g01903 Lsi-Chr9:27888660 1.47E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01903 - - csv:101220133 447.973