Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01914 ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCTACAAGCCGGCAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGGTTATCTTCCTATGATGAAGAAGATTGTTGCATGCATAAAAAATCCTGCGAATCCCCTTATTATCACTGCTTCCAAAGTCGAAGGAACAGTCGATTGGACGAGACAAGCTCTGTCCAACTCTCCGAAGCAACTATAGATCGTTACCGAAAGCATGCAAAAACAAAAGAAGCCCTGGATCCTCCATCTGTTAATATTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAATAAGATAGAGAAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAGCTTGAACATCAGTTGGAGAAAAGTGTTTCCAAAATTAGAGCCAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGATTTCTATGGGGAAGAATGGGAAAGTGAGGGAGATGGAGGAGTAAATAATAATGAAGGAGAAAGAGAAGGGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCAGAGGTGGAGACTGAATTGTTCATTGGGCCACCTGAAGCAAGGCCCCGACGATTTCTTTCCCTTCACTGA 777 41.96 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSRLSSYDEEDCCMHKKSCESPYYHCFQSRRNSRLDETSSVQLSEATIDRYRKHAKTKEALDPPSVNIVQLEHLNHEEAASLMNKIEKLEVSKRKMLGEDLGSCSMDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKDFYGEEWESEGDGGVNNNEGEREGKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27979417 27992150 + Lsi09G019140.1 Lsi09g01914 671527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01914 258 Pfam K-box region 134 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01914 258 PANTHER MADS BOX PROTEIN 1 65 - -
Lsi09g01914 258 PANTHER MADS-BOX PROTEIN SOC1 1 65 - -
Lsi09g01914 258 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Lsi09g01914 258 ProSiteProfiles K-box domain profile. 130 237 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01914 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 Coils Coil 164 184 - -
Lsi09g01914 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 PANTHER MADS-BOX PROTEIN SOC1 90 248 - -
Lsi09g01914 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Lsi09g01914 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi09g01914 258 Coils Coil 137 157 - -
Lsi09g01914 258 PANTHER MADS BOX PROTEIN 90 248 - -
Lsi09g01914 258 SUPERFAMILY SRF-like 3 69 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g01914 Lsi-Chr9:27979417 7.06E-46 dispersed
Lsi09g00321 Lsi-Chr9:3331222 Lsi09g01914 Lsi-Chr9:27979417 1.11E-56 dispersed
Lsi09g01914 Lsi-Chr9:27979417 Lsi02g00138 Lsi-Chr2:1135478 1.04E-33 dispersed
Lsi09g01914 Lsi-Chr9:27979417 Lsi09g01915 Lsi-Chr9:27992713 1.18E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25983 PF01486 K-box 6.00E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01914 - - bhj:120069607 313.538