Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01915 ATGAGAATAGAAATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTAACATTCTCAAAACGCCGAAACGGACTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCAGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTCGGCAGTGCAGGATCTGATTCCCCTTTCCTACATCGACACAATTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAACGGATGGAAGACCTGCGCAGAAAGATAAAACAAATAGTTTCTAAAATACGTTATCCTAAGAAATTCTTTGAGAAATACTTCCATGAATGCATCCTACCCTGGAAAAAAAATGAGCGTCAACTTGGGGATCTCAACAGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATGTTAGAGGCATCCAAAGTTTTTGGAGCTCTGGGTCTGGGTCTGTTGAACATGGCAACAACTTTCCATTGCATCCTTTACAACCTAACCCTATGGAATGCCAACACGAACCCATCTTACAAATCGGGTACCAGAATTATTTGACAGAAGAGGGGCCATCTGTGGAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGGTATAAATAGAATTTCATACCTCCAAAATGTAATATATATATAA 825 41.7 MRIEMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGSDSPFLHRHNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIERMEDLRRKIKQIVSKIRYPKKFFEKYFHECILPWKKNERQLGDLNRELKLKLEAEGQNVRGIQSFWSSGSGSVEHGNNFPLHPLQPNPMECQHEPILQIGYQNYLTEEGPSVEKSMTCETNFIQGWGINRISYLQNVIYI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27992713 28002376 - Lsi09G019150.1 Lsi09g01915 671528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 5 65 - -
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 169 246 - -
Lsi09g01915 274 CDD MADS_MEF2_like 6 63 IPR033896 GO:0000977|GO:0045944
Lsi09g01915 274 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 SUPERFAMILY SRF-like 6 92 IPR036879 GO:0003677|GO:0046983
Lsi09g01915 274 Gene3D - 17 87 IPR036879 GO:0003677|GO:0046983
Lsi09g01915 274 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 Coils Coil 107 134 - -
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 169 246 - -
Lsi09g01915 274 Pfam K-box region 72 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 72 147 - -
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 72 147 - -
Lsi09g01915 274 ProSiteProfiles K-box domain profile. 73 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 5 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01915 K09264 K09264; MADS-box transcription factor, plant - csv:101219421 348.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01991 Lsi09g01915 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01188 Lsi-Chr3:22316959 Lsi09g01915 Lsi-Chr9:27992713 1.16E-37 dispersed
Lsi05g01280 Lsi-Chr5:20545030 Lsi09g01915 Lsi-Chr9:27992713 5.93E-54 dispersed
Lsi07g00957 Lsi-Chr7:12109274 Lsi09g01915 Lsi-Chr9:27992713 1.39E-58 dispersed
Lsi08g00040 Lsi-Chr8:938115 Lsi09g01915 Lsi-Chr9:27992713 1.63E-26 dispersed
Lsi09g01728 Lsi-Chr9:25887574 Lsi09g01915 Lsi-Chr9:27992713 1.73E-22 dispersed
Lsi09g01915 Lsi-Chr9:27992713 Lsi08g00034 Lsi-Chr8:849912 3.79E-39 dispersed
Lsi10g00749 Lsi-Chr10:10331399 Lsi09g01915 Lsi-Chr9:27992713 7.95E-11 dispersed
Lsi09g01914 Lsi-Chr9:27979417 Lsi09g01915 Lsi-Chr9:27992713 1.18E-32 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g504 Blo01g00140 . . . . Bpe05g00919 Bma04g00845 . Cmo08g00911 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g01991 Csa06g00601 Chy11g01998 . . . Bda11g00336 . . Bpe04g00881 . . . . . Cma08g00942 . Car08g00826 . Cpe17g00325 . . . . . . . . Cla06g00019 Cam06g0206 Cec06g0024 Cco06g0023 Clacu06g0022 Cmu06g0022 Cre06g0798 Lsi09g01915 . . Cme11g02532
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011932 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 1 2 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25984 PF01486 K-box 2.30E-25 No_clan Lsi TF