Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01915 ATGAGAATAGAAATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTAACATTCTCAAAACGCCGAAACGGACTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCAGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTCGGCAGTGCAGGATCTGATTCCCCTTTCCTACATCGACACAATTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAACGGATGGAAGACCTGCGCAGAAAGATAAAACAAATAGTTTCTAAAATACGTTATCCTAAGAAATTCTTTGAGAAATACTTCCATGAATGCATCCTACCCTGGAAAAAAAATGAGCGTCAACTTGGGGATCTCAACAGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATGTTAGAGGCATCCAAAGTTTTTGGAGCTCTGGGTCTGGGTCTGTTGAACATGGCAACAACTTTCCATTGCATCCTTTACAACCTAACCCTATGGAATGCCAACACGAACCCATCTTACAAATCGGGTACCAGAATTATTTGACAGAAGAGGGGCCATCTGTGGAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGGTATAAATAGAATTTCATACCTCCAAAATGTAATATATATATAA 825 41.7 MRIEMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGSDSPFLHRHNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIERMEDLRRKIKQIVSKIRYPKKFFEKYFHECILPWKKNERQLGDLNRELKLKLEAEGQNVRGIQSFWSSGSGSVEHGNNFPLHPLQPNPMECQHEPILQIGYQNYLTEEGPSVEKSMTCETNFIQGWGINRISYLQNVIYI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27992713 28002376 - Lsi09G019150.1 Lsi09g01915 671528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 5 65 - -
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 169 246 - -
Lsi09g01915 274 CDD MADS_MEF2_like 6 63 IPR033896 GO:0000977|GO:0045944
Lsi09g01915 274 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 SUPERFAMILY SRF-like 6 92 IPR036879 GO:0003677|GO:0046983
Lsi09g01915 274 Gene3D - 17 87 IPR036879 GO:0003677|GO:0046983
Lsi09g01915 274 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lsi09g01915 274 Coils Coil 107 134 - -
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 169 246 - -
Lsi09g01915 274 Pfam K-box region 72 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01915 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 72 147 - -
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 72 147 - -
Lsi09g01915 274 ProSiteProfiles K-box domain profile. 73 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01915 274 PANTHER MADS BOX PROTEIN 5 65 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01991 Lsi09g01915 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01188 Lsi-Chr3:22316959 Lsi09g01915 Lsi-Chr9:27992713 1.16E-37 dispersed
Lsi05g01280 Lsi-Chr5:20545030 Lsi09g01915 Lsi-Chr9:27992713 5.93E-54 dispersed
Lsi07g00957 Lsi-Chr7:12109274 Lsi09g01915 Lsi-Chr9:27992713 1.39E-58 dispersed
Lsi08g00040 Lsi-Chr8:938115 Lsi09g01915 Lsi-Chr9:27992713 1.63E-26 dispersed
Lsi09g01728 Lsi-Chr9:25887574 Lsi09g01915 Lsi-Chr9:27992713 1.73E-22 dispersed
Lsi09g01915 Lsi-Chr9:27992713 Lsi08g00034 Lsi-Chr8:849912 3.79E-39 dispersed
Lsi10g00749 Lsi-Chr10:10331399 Lsi09g01915 Lsi-Chr9:27992713 7.95E-11 dispersed
Lsi09g01914 Lsi-Chr9:27979417 Lsi09g01915 Lsi-Chr9:27992713 1.18E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25984 PF01486 K-box 2.30E-25 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01915 K09264 - csv:101219421 348.977