Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01919 ATGGATAATTACGGTTCTTCGCCTCCATATCCATACCACAATCCTTACGCATACCCTCGTCCAGTTGCTCCTCAATACCCACCTCCTTCTCAATATCCTCCTCCTCCTTCTCAATATCCTCCTCCTCATTATACACATCCAAATTCAGATCCGTATGCTCGTCCTCCTTACCCTTACCCCTATAACCCTTCACATGCCTCTGCATTTGCATATCCCCCACCCCCATCTCCTTCTGGTCTAGTAGAGTATTTTCCACACCCACACCCACCTCCACATTCTAGCCCTCTACCTTACCCATATCCTTACTCTGATGCCTCATCTACTAATAATGGTGCTAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCGGTATCAAGAATCTAATACATACCCACCATCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATAGGAATGATAGCACTGATTCCGCATCGTCTGTCTCTTCTGCATACCCTCCTCTGGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCAACTGCACAGCCTTCAGCTTCGTTATTGACGAATTCGCCTCAAAGTGTAAGATATGATCGGCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTCGACACAGGGAATTCAGATCAAATGGTTACATCTAAACAACCTTCATTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCGTTGCACGGTAAAGCATCATTGAGAGTTTTTCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACTTTGGGGGATATGTTTGCAAAATTACCTGGGAACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGCGATCCTTATGTATCGATCAATATAGCAAATGCAGTAATTGGGAGGACTTTTGTTATTAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGCGATGTTGTTGGTTCACAGCTAATAGGAACTGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATGGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAAGTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCACTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGACGGGCACCTTCCAAATTTGATGCTTGATAATGGTATGCACTATGTACAAGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTACATAACCGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTACTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAGCACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTCGGAACTATATATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATCATAGCTTTTGTTGGAGGGCTTGATTTATGTGATGGGCGGTATGATACTCCATCACATCCCATATTTCGGACCCTTCAAACAGTACACAAGGACGATTACCACAATCCTACATACACGGGTAGTGCTGTTGGTTGTCCAAGAGAACCATGGCATGATCTACACAGCAAAATTGATGGTCCAGCAGCATATGATGTTTTGACCAACTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTCATGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTGCTGCACTAATGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAACTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGATATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATTGAGAACCAATATTTCATTGGGTCATCCTTCAATTGGAATTCCAATAAAGATATAGGTGCCAACAATTTGATACCAATGGAAATTGCGCTAAAGATTGCTGACAAAATCAGAGCAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGTGTTCCAACGGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCGTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACGGGAACTACCGAGGAGTGTTTCAACCACCCAGAGAGCCTGGAATGTGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCCGTTGAAGTTGATAGAAGAGGGAGAGTAAGATCTCTTCCTGGTCATGAAAATTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCAGGAGAATCTCACTATCTAA 3288 43.1 MDNYGSSPPYPYHNPYAYPRPVAPQYPPPSQYPPPPSQYPPPHYTHPNSDPYARPPYPYPYNPSHASAFAYPPPPSPSGLVEYFPHPHPPPHSSPLPYPYPYSDASSTNNGARPSIQYHNNFQPGSSPYRYQESNTYPPSESQYPPPPSRVNSFSGHYRNDSTDSASSVSSAYPPLDDLLCNVHLSDHQPTAPASPPAPATAQPSASLLTNSPQSVRYDRRDRFYGFPNSSFSSFDTGNSDQMVTSKQPSFSHSSSFGGSQHSQNLQIVPLHGKASLRVFLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGRVSHKITSDPYVSINIANAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAIPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMHYVQGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTVHKDDYHNPTYTGSAVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIIGISEACCTNENDPESWHVQIFRSIDSTSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEDAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHTGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28031240 28042499 + Lsi09G019190.1 Lsi09g01919 671532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01919 1095 CDD C2_plant_PLD 279 430 - -
Lsi09g01919 1095 Pfam Phospholipase D Active site motif 609 643 IPR001736 GO:0003824
Lsi09g01919 1095 Pfam Phospholipase D Active site motif 942 968 IPR001736 GO:0003824
Lsi09g01919 1095 SMART C2_3c 285 407 IPR000008 -
Lsi09g01919 1095 Pfam C2 domain 284 410 IPR000008 -
Lsi09g01919 1095 PANTHER PHOSPHOLIPASE D ALPHA 1 184 1095 - -
Lsi09g01919 1095 Pfam Phospholipase D C terminal 1015 1085 IPR024632 -
Lsi09g01919 1095 Gene3D Endonuclease Chain A 486 722 - -
Lsi09g01919 1095 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 608 643 IPR001736 GO:0003824
Lsi09g01919 1095 SMART pld_4 608 643 IPR001736 GO:0003824
Lsi09g01919 1095 SMART pld_4 941 968 IPR001736 GO:0003824
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 79 171 - -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 100 139 - -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 186 214 - -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 236 258 - -
Lsi09g01919 1095 Gene3D Endonuclease Chain A 756 991 - -
Lsi09g01919 1095 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 431 IPR035892 -
Lsi09g01919 1095 Gene3D C2 domain 280 422 IPR035892 -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 147 171 - -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 79 98 - -
Lsi09g01919 1095 SUPERFAMILY Phospholipase D/nuclease 741 1027 - -
Lsi09g01919 1095 MobiDBLite consensus disorder prediction 21 59 - -
Lsi09g01919 1095 PANTHER PHOSPHOLIPASE D 184 1095 IPR015679 -
Lsi09g01919 1095 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 941 968 IPR001736 GO:0003824
Lsi09g01919 1095 SUPERFAMILY Phospholipase D/nuclease 450 708 - -
Lsi09g01919 1095 ProSiteProfiles C2 domain profile. 262 408 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00464 Lsi-Chr7:4922920 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi07g01376 Lsi-Chr7:20013246 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi08g01204 Lsi-Chr8:20575171 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi08g01289 Lsi-Chr8:21243604 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi09g01456 Lsi-Chr9:22538285 Lsi09g01919 Lsi-Chr9:28031240 2.60E-16 dispersed
Lsi09g01919 Lsi-Chr9:28031240 Lsi11g00608 Lsi-Chr11:6426637 3.62E-14 dispersed
Lsi09g01919 Lsi-Chr9:28031240 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01919 K01115 - csv:101218942 1985.3