Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01919 | ATGGATAATTACGGTTCTTCGCCTCCATATCCATACCACAATCCTTACGCATACCCTCGTCCAGTTGCTCCTCAATACCCACCTCCTTCTCAATATCCTCCTCCTCCTTCTCAATATCCTCCTCCTCATTATACACATCCAAATTCAGATCCGTATGCTCGTCCTCCTTACCCTTACCCCTATAACCCTTCACATGCCTCTGCATTTGCATATCCCCCACCCCCATCTCCTTCTGGTCTAGTAGAGTATTTTCCACACCCACACCCACCTCCACATTCTAGCCCTCTACCTTACCCATATCCTTACTCTGATGCCTCATCTACTAATAATGGTGCTAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCGGTATCAAGAATCTAATACATACCCACCATCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATAGGAATGATAGCACTGATTCCGCATCGTCTGTCTCTTCTGCATACCCTCCTCTGGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCAACTGCACAGCCTTCAGCTTCGTTATTGACGAATTCGCCTCAAAGTGTAAGATATGATCGGCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTCGACACAGGGAATTCAGATCAAATGGTTACATCTAAACAACCTTCATTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCGTTGCACGGTAAAGCATCATTGAGAGTTTTTCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACTTTGGGGGATATGTTTGCAAAATTACCTGGGAACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGCGATCCTTATGTATCGATCAATATAGCAAATGCAGTAATTGGGAGGACTTTTGTTATTAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGCGATGTTGTTGGTTCACAGCTAATAGGAACTGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATGGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAAGTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCACTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGACGGGCACCTTCCAAATTTGATGCTTGATAATGGTATGCACTATGTACAAGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTACATAACCGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTACTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAGCACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTCGGAACTATATATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATCATAGCTTTTGTTGGAGGGCTTGATTTATGTGATGGGCGGTATGATACTCCATCACATCCCATATTTCGGACCCTTCAAACAGTACACAAGGACGATTACCACAATCCTACATACACGGGTAGTGCTGTTGGTTGTCCAAGAGAACCATGGCATGATCTACACAGCAAAATTGATGGTCCAGCAGCATATGATGTTTTGACCAACTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTCATGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTGCTGCACTAATGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAACTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGATATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATTGAGAACCAATATTTCATTGGGTCATCCTTCAATTGGAATTCCAATAAAGATATAGGTGCCAACAATTTGATACCAATGGAAATTGCGCTAAAGATTGCTGACAAAATCAGAGCAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGTGTTCCAACGGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCGTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACGGGAACTACCGAGGAGTGTTTCAACCACCCAGAGAGCCTGGAATGTGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCCGTTGAAGTTGATAGAAGAGGGAGAGTAAGATCTCTTCCTGGTCATGAAAATTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCAGGAGAATCTCACTATCTAA | 3288 | 43.1 | MDNYGSSPPYPYHNPYAYPRPVAPQYPPPSQYPPPPSQYPPPHYTHPNSDPYARPPYPYPYNPSHASAFAYPPPPSPSGLVEYFPHPHPPPHSSPLPYPYPYSDASSTNNGARPSIQYHNNFQPGSSPYRYQESNTYPPSESQYPPPPSRVNSFSGHYRNDSTDSASSVSSAYPPLDDLLCNVHLSDHQPTAPASPPAPATAQPSASLLTNSPQSVRYDRRDRFYGFPNSSFSSFDTGNSDQMVTSKQPSFSHSSSFGGSQHSQNLQIVPLHGKASLRVFLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGRVSHKITSDPYVSINIANAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAIPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMHYVQGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTVHKDDYHNPTYTGSAVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIIGISEACCTNENDPESWHVQIFRSIDSTSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEDAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHTGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI | 1095 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 28031240 | 28042499 | + | Lsi09G019190.1 | Lsi09g01919 | 671532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01919 | 1095 | CDD | C2_plant_PLD | 279 | 430 | - | - | |
Lsi09g01919 | 1095 | Pfam | Phospholipase D Active site motif | 609 | 643 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | Pfam | Phospholipase D Active site motif | 942 | 968 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | SMART | C2_3c | 285 | 407 | IPR000008 | - | |
Lsi09g01919 | 1095 | Pfam | C2 domain | 284 | 410 | IPR000008 | - | |
Lsi09g01919 | 1095 | PANTHER | PHOSPHOLIPASE D ALPHA 1 | 184 | 1095 | - | - | |
Lsi09g01919 | 1095 | Pfam | Phospholipase D C terminal | 1015 | 1085 | IPR024632 | - | |
Lsi09g01919 | 1095 | Gene3D | Endonuclease Chain A | 486 | 722 | - | - | |
Lsi09g01919 | 1095 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 608 | 643 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | SMART | pld_4 | 608 | 643 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | SMART | pld_4 | 941 | 968 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 79 | 171 | - | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 100 | 139 | - | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 186 | 214 | - | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
Lsi09g01919 | 1095 | Gene3D | Endonuclease Chain A | 756 | 991 | - | - | |
Lsi09g01919 | 1095 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 282 | 431 | IPR035892 | - | |
Lsi09g01919 | 1095 | Gene3D | C2 domain | 280 | 422 | IPR035892 | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 147 | 171 | - | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 79 | 98 | - | - | |
Lsi09g01919 | 1095 | SUPERFAMILY | Phospholipase D/nuclease | 741 | 1027 | - | - | |
Lsi09g01919 | 1095 | MobiDBLite | consensus disorder prediction | 21 | 59 | - | - | |
Lsi09g01919 | 1095 | PANTHER | PHOSPHOLIPASE D | 184 | 1095 | IPR015679 | - | |
Lsi09g01919 | 1095 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 941 | 968 | IPR001736 | GO:0003824 | |
Lsi09g01919 | 1095 | SUPERFAMILY | Phospholipase D/nuclease | 450 | 708 | - | - | |
Lsi09g01919 | 1095 | ProSiteProfiles | C2 domain profile. | 262 | 408 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00464 | Lsi-Chr7:4922920 | Lsi09g01919 | Lsi-Chr9:28031240 | 0 | dispersed | |
Lsi07g01376 | Lsi-Chr7:20013246 | Lsi09g01919 | Lsi-Chr9:28031240 | 0 | dispersed | |
Lsi08g01204 | Lsi-Chr8:20575171 | Lsi09g01919 | Lsi-Chr9:28031240 | 0 | dispersed | |
Lsi08g01289 | Lsi-Chr8:21243604 | Lsi09g01919 | Lsi-Chr9:28031240 | 0 | dispersed | |
Lsi09g01456 | Lsi-Chr9:22538285 | Lsi09g01919 | Lsi-Chr9:28031240 | 2.60E-16 | dispersed | |
Lsi09g01919 | Lsi-Chr9:28031240 | Lsi11g00608 | Lsi-Chr11:6426637 | 3.62E-14 | dispersed | |
Lsi09g01919 | Lsi-Chr9:28031240 | Lsi01g00563 | Lsi-Chr1:4495939 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01919 | K01115 | - | csv:101218942 | 1985.3 |