Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01921 | ATGGCTGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTTCCCCCACCCATCTCCGCATCAATGAATCCGAATCCTCTCGAATCGACCTTCTTCCTCTTTCTCCCAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCGCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAAACCGTCTCATCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGCCACACCAAAGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCAACCTGTGCCGCCCGTATCTTCCAGTTGACTCGAGAGCTTGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCGGCCATCATCGCTGCTACTGGGACTGGTACAATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAATCAAGATTCCGCCGATCCTTCCGCCGCTAAGAAGCGCCGTAAGCGTCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTTTCCGCCTCGAACGGCGTCGTTCATGCCGGTACCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTGCAGCTCCCGCGACGCCGCTCATCAACACGACGGCGCGGCCCATTTCCACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCTAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCCCGACGACCGGAAAAACAACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA | 1017 | 56.34 | MADIQKQELDDDDDSSPTHLRINESESSRIDLLPLSPKQEHPDSDDSNLPPSGIQLLKFTADIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVHAGTPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFAAPATPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTTGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 28061652 | 28062668 | - | Lsi09G019210.1 | Lsi09g01921 | 671534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01921 | 338 | Pfam | TCP family transcription factor | 76 | 169 | IPR017887 | - | |
Lsi09g01921 | 338 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 14 | 336 | IPR005333 | GO:0003700 | |
Lsi09g01921 | 338 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lsi09g01921 | 338 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Lsi09g01921 | 338 | ProSiteProfiles | TCP domain profile. | 77 | 131 | IPR017887 | - | |
Lsi09g01921 | 338 | MobiDBLite | consensus disorder prediction | 258 | 311 | - | - | |
Lsi09g01921 | 338 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - | |
Lsi09g01921 | 338 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Lsi09g01921 | 338 | PANTHER | TRANSCRIPTION FACTOR TCP9 | 14 | 336 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01472 | Lsi-Chr6:25231360 | Lsi09g01921 | Lsi-Chr9:28061652 | 1.22E-38 | dispersed | |
Lsi09g01743 | Lsi-Chr9:26074586 | Lsi09g01921 | Lsi-Chr9:28061652 | 7.55E-36 | dispersed | |
Lsi05g01274 | Lsi-Chr5:20473303 | Lsi09g01921 | Lsi-Chr9:28061652 | 1.55E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25985 | PF03634 | TCP | 5.70E-30 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01921 | - | - | bhj:120068861 | 547.74 |