Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01921 ATGGCTGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTTCCCCCACCCATCTCCGCATCAATGAATCCGAATCCTCTCGAATCGACCTTCTTCCTCTTTCTCCCAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCGCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAAACCGTCTCATCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGCCACACCAAAGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCAACCTGTGCCGCCCGTATCTTCCAGTTGACTCGAGAGCTTGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCGGCCATCATCGCTGCTACTGGGACTGGTACAATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAATCAAGATTCCGCCGATCCTTCCGCCGCTAAGAAGCGCCGTAAGCGTCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTTTCCGCCTCGAACGGCGTCGTTCATGCCGGTACCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTGCAGCTCCCGCGACGCCGCTCATCAACACGACGGCGCGGCCCATTTCCACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCTAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCCCGACGACCGGAAAAACAACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1017 56.34 MADIQKQELDDDDDSSPTHLRINESESSRIDLLPLSPKQEHPDSDDSNLPPSGIQLLKFTADIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVHAGTPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFAAPATPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTTGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28061652 28062668 - Lsi09G019210.1 Lsi09g01921 671534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01921 338 Pfam TCP family transcription factor 76 169 IPR017887 -
Lsi09g01921 338 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 336 IPR005333 GO:0003700
Lsi09g01921 338 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 1 53 - -
Lsi09g01921 338 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 258 311 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 151 178 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 164 178 - -
Lsi09g01921 338 PANTHER TRANSCRIPTION FACTOR TCP9 14 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01472 Lsi-Chr6:25231360 Lsi09g01921 Lsi-Chr9:28061652 1.22E-38 dispersed
Lsi09g01743 Lsi-Chr9:26074586 Lsi09g01921 Lsi-Chr9:28061652 7.55E-36 dispersed
Lsi05g01274 Lsi-Chr5:20473303 Lsi09g01921 Lsi-Chr9:28061652 1.55E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25985 PF03634 TCP 5.70E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01921 - - bhj:120068861 547.74