Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01921 ATGGCTGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTTCCCCCACCCATCTCCGCATCAATGAATCCGAATCCTCTCGAATCGACCTTCTTCCTCTTTCTCCCAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCGCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAAACCGTCTCATCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGCCACACCAAAGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCAACCTGTGCCGCCCGTATCTTCCAGTTGACTCGAGAGCTTGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCGGCCATCATCGCTGCTACTGGGACTGGTACAATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAATCAAGATTCCGCCGATCCTTCCGCCGCTAAGAAGCGCCGTAAGCGTCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTTTCCGCCTCGAACGGCGTCGTTCATGCCGGTACCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTGCAGCTCCCGCGACGCCGCTCATCAACACGACGGCGCGGCCCATTTCCACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCTAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCCCGACGACCGGAAAAACAACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1017 56.34 MADIQKQELDDDDDSSPTHLRINESESSRIDLLPLSPKQEHPDSDDSNLPPSGIQLLKFTADIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVHAGTPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFAAPATPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTTGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28061652 28062668 - Lsi09G019210.1 Lsi09g01921 671534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01921 338 Pfam TCP family transcription factor 76 169 IPR017887 -
Lsi09g01921 338 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 336 IPR005333 GO:0003700
Lsi09g01921 338 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 1 53 - -
Lsi09g01921 338 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 258 311 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 151 178 - -
Lsi09g01921 338 MobiDBLite consensus disorder prediction 164 178 - -
Lsi09g01921 338 PANTHER TRANSCRIPTION FACTOR TCP9 14 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01921 - - - bhj:120068861 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01472 Lsi-Chr6:25231360 Lsi09g01921 Lsi-Chr9:28061652 1.22E-38 dispersed
Lsi09g01743 Lsi-Chr9:26074586 Lsi09g01921 Lsi-Chr9:28061652 7.55E-36 dispersed
Lsi05g01274 Lsi-Chr5:20473303 Lsi09g01921 Lsi-Chr9:28061652 1.55E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25985 PF03634 TCP 5.70E-30 No_clan Lsi TF