Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01939 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCTACCACCAACGCCAATAATAACCCCACCGGCGGCATCGGCGGCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCCAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGATATGGATGATGTGTGTTTTTGATGTCATGGACCAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCAATCTGTTCGAACTGTGGTGGTCCGGCGATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAGGATGAATTGGACCGGGTTTGTGCGCTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGTTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTTGGAGGTGGGTTGTCGGGCAATCTGTCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGACGAGCCACTTTGGATAGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAGGAGTATTTGAGGACATTCACTCCTTGCATAGGCATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAACAGCTTGGCTCTCGTGGAGACATTGATGGACTCGTCAAAATGTGTGCAGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAATGGCATGGGGGGAACGAGGAATGGTGCGCTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCCCCGTTGGTTCCAGTCCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACTGGTGGTGGTTCGTCATTTGGTAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTGCACCAACTCTACCGTCCCCTACTTAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTCGCCACCCTTCAACGGCAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGATCACACTGCCATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTAGCCCAACGAATGACAGCGAACTTCTGCGCCGGTGTGTGTGCATCCACAGTGCATAAGTGGAACAAGCTGAACGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTGTCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGTCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCAGGGTCGCTTGTGGTTTACGCGCCGGTGGACATTCCGGCCATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCGCTTCTACCGTCAGGGTTTGCGATCGTGCCTGATGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGACGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAAACCTGA 2565 53.84 MSFGGFLDGGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKIWMMCVFDVMDQTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLSVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYLRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSSKCVQNRWAEMFPCMIARTTTTDVISNGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTGGGSSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSDGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28175003 28180769 + Lsi09G019390.1 Lsi09g01939 671552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01939 854 ProSiteProfiles START domain profile. 346 589 IPR002913 GO:0008289
Lsi09g01939 854 CDD START_ArGLABRA2_like 350 585 - -
Lsi09g01939 854 SUPERFAMILY Homeodomain-like 117 190 IPR009057 -
Lsi09g01939 854 SUPERFAMILY Bet v1-like 348 586 - -
Lsi09g01939 854 MobiDBLite consensus disorder prediction 96 115 - -
Lsi09g01939 854 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Lsi09g01939 854 Gene3D - 122 193 - -
Lsi09g01939 854 CDD homeodomain 134 190 IPR001356 GO:0003677
Lsi09g01939 854 Pfam START domain 355 586 IPR002913 GO:0008289
Lsi09g01939 854 Pfam Homeodomain 135 190 IPR001356 GO:0003677
Lsi09g01939 854 SMART START_1 355 586 IPR002913 GO:0008289
Lsi09g01939 854 Coils Coil 245 265 - -
Lsi09g01939 854 Coils Coil 205 230 - -
Lsi09g01939 854 SUPERFAMILY Bet v1-like 614 847 - -
Lsi09g01939 854 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Lsi09g01939 854 MobiDBLite consensus disorder prediction 95 142 - -
Lsi09g01939 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 852 IPR042160 -
Lsi09g01939 854 SMART HOX_1 133 196 IPR001356 GO:0003677
Lsi09g01939 854 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 80 852 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g02010 Lsi09g01939 CCT
Lsi05g02010 Lsi09g01939 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02804 Lsi-Chr2:34227280 Lsi09g01939 Lsi-Chr9:28175003 5.73E-139 dispersed
Lsi07g00510 Lsi-Chr7:5338014 Lsi09g01939 Lsi-Chr9:28175003 0 dispersed
Lsi09g01939 Lsi-Chr9:28175003 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi02g00024 Lsi-Chr2:283164 Lsi09g01939 Lsi-Chr9:28175003 0 transposed
Lsi05g00276 Lsi-Chr5:3590233 Lsi09g01939 Lsi-Chr9:28175003 0 transposed
Lsi05g02010 Lsi-Chr5:27152991 Lsi09g01939 Lsi-Chr9:28175003 0 wgd
Lsi05g01248 Lsi-Chr5:20287533 Lsi09g01939 Lsi-Chr9:28175003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25987 PF01852 START 1.70E-57 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01939 K09338 - csv:101222248 1527.3