Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00018 ATGGATAAACCGAACCCAAATCAACGGCCATCATGGGATTTGCTCCATTTTACATGGGGTATGCAATACGGTTGGGTGGGAGGCATATTTATTGGCAAATGGGGACTTTATCCTCAACCGTCATCCCTTATGCGCACTACCTGTTCGATCAAAGTCCTCAGACTGCTTTTGGCTTCTGCTTCTGCTTACTTCACCTACTTCAAAGTGGGTGTTTCACTCTCTTTTTCTTTTTTTGAATCATGCAGAGAATCAAACACAACAATCTCTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTGGCAATCTTCTTCCAAAGGGGCAATATCAACAGATGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGGTTGGTGGTGGACACAAACGTGGAAGAAGGCAGTTTCAAGGCTGTGGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTAGCAATGAAACCTCTGGAGTTTTCCCAAGGGTATCGCAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACCAAACCAGAATGCCCCATCGTGTATGCGAGCAGTGGCTTCTTTGGTATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAGTGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCAATACGACCGAACGGGTTGCCAAAGTCATTAATCCGCTATGATGGTAACTGGTCTTCCAAAGTTCTATGGAATGTAATGCTACCTTCACCTCTAATTTTCACTCTTGATGTTTCAGCTCGCCAGAAGGAAAAGGCAATGGTTTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAAGACCTCAGAGATGATGGGTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGACCGATGAAGTAGAACGGACTGATAGTTGGGACCACGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAGGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTCCAGTTGATCAACTATACCAAGACTGGCAAAAAGTTCTGGAATTTATTTCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAATTCTTCTTGGACTGCTATACAAAAGCTTCTAGATCCTGTAAAATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTCGAGGTACGCGTAAGCTGGCCCGGACACTCACGAATATCCTACGAAACCCAATGTTTGGTAAATGAAATTGATAAGCAGCCATCATATCTATTCGGTCTATCTGGGACTTGGACGCTGCTATTTGGACTTTTCCTTTCAGCTGACAAACATATTTGCTGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTTCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACGCACGTATGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGACATGTTACGCTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAGCCGCAGATTGTGAAGTATCCATTGCCTCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTCGCAGAGCCAATCACACAATCAAATTCTTTTGTTGGAACCGAAGAATATATTGCTCCTGAAATTATAACAGGGGAAGGTCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCGGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAGCAGCACCCTTTTTTCCAATCAATTAACTGGCCACTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTTACTGGAAAAGATGGAACAACCAAGAAAGTAAACTGGGAAGATGATGGTGTGCTTAGCCCAATGGATATGGATTTTTTCTGA 3204 43.23 MDKPNPNQRPSWDLLHFTWGMQYGWVGGIFIGKWGLYPQPSSLMRTTCSIKVLRLLLASASAYFTYFKVGVSLSFSFFESCRESNTTISPGNESKEDRKSWQSSSKGAISTDANIAERAAEWGLVVDTNVEEGSFKAVGRASGEGGGSKRSSEKISGTGRTSSFSNETSGVFPRVSQELKDALASLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDSGNTIKFIGMQVEVSKYTEGINDKAIRPNGLPKSLIRYDGNWSSKVLWNVMLPSPLIFTLDVSARQKEKAMVSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLRDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMTDEVERTDSWDHAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHNSSWTAIQKLLDPVKLSDVVKKLDSNILSQLNHWVVETLAVEVRVSWPGHSRISYETQCLVNEIDKQPSYLFGLSGTWTLLFGLFLSADKHICCSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLPHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKKVNWEDDGVLSPMDMDFF 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 296026 312832 - Lsi10G000180.1 Lsi10g00018 671575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00018 1067 MobiDBLite consensus disorder prediction 393 418 - -
Lsi10g00018 1067 Gene3D PAS domain 460 624 - -
Lsi10g00018 1067 MobiDBLite consensus disorder prediction 137 169 - -
Lsi10g00018 1067 PANTHER FLIPPASE KINASE 1-RELATED 340 662 - -
Lsi10g00018 1067 PANTHER FLIPPASE KINASE 1-RELATED 145 317 - -
Lsi10g00018 1067 PANTHER FLIPPASE KINASE 1-RELATED 744 1065 - -
Lsi10g00018 1067 SMART pas_2 177 246 IPR000014 -
Lsi10g00018 1067 SMART pas_2 473 542 IPR000014 -
Lsi10g00018 1067 Pfam Protein kinase domain 752 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00018 1067 SMART serkin_6 736 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00018 1067 CDD PAS 202 291 IPR000014 -
Lsi10g00018 1067 Gene3D PAS domain 189 309 - -
Lsi10g00018 1067 ProSiteProfiles PAC domain profile. 249 303 IPR000700 -
Lsi10g00018 1067 PANTHER BNAA02G07840D PROTEIN 145 317 - -
Lsi10g00018 1067 PANTHER BNAA02G07840D PROTEIN 340 662 - -
Lsi10g00018 1067 PANTHER BNAA02G07840D PROTEIN 744 1065 - -
Lsi10g00018 1067 Gene3D Phosphorylase Kinase; domain 1 745 815 - -
Lsi10g00018 1067 ProSiteProfiles Protein kinase domain profile. 721 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00018 1067 SUPERFAMILY Protein kinase-like (PK-like) 745 1043 IPR011009 -
Lsi10g00018 1067 Gene3D Transferase(Phosphotransferase) domain 1 816 1035 - -
Lsi10g00018 1067 ProSiteProfiles PAS repeat profile. 175 248 IPR000014 -
Lsi10g00018 1067 MobiDBLite consensus disorder prediction 83 106 - -
Lsi10g00018 1067 ProSiteProfiles PAS repeat profile. 471 544 IPR000014 -
Lsi10g00018 1067 ProSiteProfiles PAC domain profile. 545 599 IPR000700 -
Lsi10g00018 1067 SUPERFAMILY PYP-like sensor domain (PAS domain) 487 586 IPR035965 -
Lsi10g00018 1067 CDD PAS 486 586 IPR000014 -
Lsi10g00018 1067 CDD STKc_phototropin_like 745 1038 - -
Lsi10g00018 1067 SMART pac_2 548 590 IPR001610 -
Lsi10g00018 1067 SMART pac_2 252 294 IPR001610 -
Lsi10g00018 1067 Pfam PAS domain 196 292 IPR000014 -
Lsi10g00018 1067 Pfam PAS domain 494 586 IPR000014 -
Lsi10g00018 1067 SUPERFAMILY PYP-like sensor domain (PAS domain) 195 292 IPR035965 -
Lsi10g00018 1067 MobiDBLite consensus disorder prediction 149 169 - -
Lsi10g00018 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Lsi10g00018 1067 TIGRFAM sensory_box: PAS domain S-box protein 201 292 IPR000014 -
Lsi10g00018 1067 TIGRFAM sensory_box: PAS domain S-box protein 496 586 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00459 Lsi-Chr4:4356328 Lsi10g00018 Lsi-Chr10:296026 5.24E-25 dispersed
Lsi10g00018 Lsi-Chr10:296026 Lsi10g01321 Lsi-Chr10:17417465 5.21E-140 dispersed
Lsi04g00123 Lsi-Chr4:1376423 Lsi10g00018 Lsi-Chr10:296026 1.90E-45 transposed
Lsi04g01097 Lsi-Chr4:13301322 Lsi10g00018 Lsi-Chr10:296026 2.85E-09 transposed
Lsi05g01496 Lsi-Chr5:22783776 Lsi10g00018 Lsi-Chr10:296026 3.64E-31 transposed
Lsi11g00764 Lsi-Chr11:8612074 Lsi10g00018 Lsi-Chr10:296026 2.22E-06 transposed
Lsi10g00018 Lsi-Chr10:296026 Lsi11g01320 Lsi-Chr11:21818657 8.84E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83933 PF00069 Pkinase 3.70E-58 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00018 K20715 - csv:101215355 1007.28