Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00028 ATGGATGGATTTAGGAGTAACGACAACAAACAAAGCGTTGAAAGGCATTCCCGCGTCGAGATGGGGTCATTAGGCGAGAAAACCATATTGGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAACAGAAAGAATTTTTCTATTGAGGGATCTATCCATAGTTCTTCATTGGGTGGTGGTTCGCAGAAACTTAGTTACAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTCTTCTCTGCTAAAATAAACCTTCTCATGCCTTTTGGGCCTTTAGCAATAATAGTCAGCAATTTATCTGGTCATCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTGGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCGACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAGAGAGAGCAGGTCTTCAGTAAGGCGGCTGCTACAGTGAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACACACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCAGTTGATGAGGGGGATAATGAAGGGAGTTCTGATGATGAAGAAGCTCCTGAGATTAGCATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATCTCCGTCCTCTCCGAATACTTGGTTAATGCAATCGAGGGGGCATCGGTTGCAATGAACATACCGGTAGCATTCATTAGTGTTATCCTACTACCTATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCGTCAACACAAATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCTATGGACTTGAATTTTCAACTTTTTGAGACTGCCACGCTTTTCATCACGGTCATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCATCAGTTGGCTACAACCATGTTCAGAAATCATTTTTCCATGTTTTGTTACAACCAATGGCAATAGATGTTTCCTTGATTCTTCTAGTCGTTGGTGCTGATCTTGTTTTATCATTGGAAGCTTTGGCAAATACTCAGAACTTAGCAACTAGGAATGCTAGATATTGA 1503 41.32 MDGFRSNDNKQSVERHSRVEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGSIHSSSLGGGSQKLSYSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEGDNEGSSDDEEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGYNHVQKSFFHVLLQPMAIDVSLILLVVGADLVLSLEALANTQNLATRNARY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 461280 466840 - Lsi10G000280.1 Lsi10g00028 671585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00028 500 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016021|GO:0055085
Lsi10g00028 500 Pfam Sodium/calcium exchanger protein 298 437 IPR004837 GO:0016021|GO:0055085
Lsi10g00028 500 TIGRFAM cax: calcium/proton exchanger 92 440 IPR004798 GO:0006816|GO:0015369
Lsi10g00028 500 Gene3D - 283 441 IPR044880 -
Lsi10g00028 500 Gene3D - 138 272 IPR044880 -
Lsi10g00028 500 TIGRFAM caca2: calcium/proton exchanger 78 440 - -
Lsi10g00028 500 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 452 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi10g00028 500 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01286 Lsi-Chr2:17183971 Lsi10g00028 Lsi-Chr10:461280 7.79E-46 dispersed
Lsi07g00632 Lsi-Chr7:6769396 Lsi10g00028 Lsi-Chr10:461280 4.95E-171 dispersed
Lsi07g01449 Lsi-Chr7:21048190 Lsi10g00028 Lsi-Chr10:461280 1.22E-20 dispersed
Lsi07g01450 Lsi-Chr7:21054230 Lsi10g00028 Lsi-Chr10:461280 2.30E-123 dispersed
Lsi10g00028 Lsi-Chr10:461280 Lsi03g02209 Lsi-Chr3:33099706 1.18E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00028 K07300 - csv:101215915 824.313