Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00033 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTGTGTGAAAGATGCCATTCGCAACCCTCCACGGTAAGGTGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATTTGGTCCTTTGTTTTGGATGTTCCTTCTTTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGCCTTTCGGAGAACAACGCCGGTCAAAGAATGCCCGGGTCAATGGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTCGGATCATCTTCACTTATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTTCGGTGAGGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCGTCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCCTTCCCATCTACTGATCGTAACAGCGCCGTGCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCTAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.57 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSLNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPGSMEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVELANVALPKFCCPGTKVAEFFGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSAKTEPILCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSTDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 550051 554176 + Lsi10G000330.1 Lsi10g00033 671590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00033 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270
Lsi10g00033 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 416 - -
Lsi10g00033 417 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi10g00033 417 CDD Bbox1_BBX-like 47 91 - -
Lsi10g00033 417 CDD Bbox1_BBX-like 5 47 - -
Lsi10g00033 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi10g00033 417 Pfam CCT motif 360 402 IPR010402 GO:0005515
Lsi10g00033 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
Lsi10g00033 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00033 Lsi-Chr10:550051 Lsi10g00156 Lsi-Chr10:2515335 3.17E-69 dispersed
Lsi11g01617 Lsi-Chr11:24510637 Lsi10g00033 Lsi-Chr10:550051 4.93E-09 dispersed
Lsi04g00215 Lsi-Chr4:2262772 Lsi10g00033 Lsi-Chr10:550051 1.38E-30 transposed
Lsi07g00003 Lsi-Chr7:60412 Lsi10g00033 Lsi-Chr10:550051 1.10E-13 transposed
Lsi10g00033 Lsi-Chr10:550051 Lsi11g01330 Lsi-Chr11:21919157 1.17E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25988 PF06203 CCT 6.50E-16 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00033 - - csv:101216401 779.245