Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00033 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTGTGTGAAAGATGCCATTCGCAACCCTCCACGGTAAGGTGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATTTGGTCCTTTGTTTTGGATGTTCCTTCTTTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGCCTTTCGGAGAACAACGCCGGTCAAAGAATGCCCGGGTCAATGGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTCGGATCATCTTCACTTATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTTCGGTGAGGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCGTCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCCTTCCCATCTACTGATCGTAACAGCGCCGTGCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCTAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.57 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSLNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPGSMEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVELANVALPKFCCPGTKVAEFFGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSAKTEPILCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSTDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 550051 554176 + Lsi10G000330.1 Lsi10g00033 671590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00033 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270
Lsi10g00033 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 416 - -
Lsi10g00033 417 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi10g00033 417 CDD Bbox1_BBX-like 47 91 - -
Lsi10g00033 417 CDD Bbox1_BBX-like 5 47 - -
Lsi10g00033 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi10g00033 417 Pfam CCT motif 360 402 IPR010402 GO:0005515
Lsi10g00033 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
Lsi10g00033 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00033 - - - csv:101216401 779.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00033 Lsi-Chr10:550051 Lsi10g00156 Lsi-Chr10:2515335 3.17E-69 dispersed
Lsi11g01617 Lsi-Chr11:24510637 Lsi10g00033 Lsi-Chr10:550051 4.93E-09 dispersed
Lsi04g00215 Lsi-Chr4:2262772 Lsi10g00033 Lsi-Chr10:550051 1.38E-30 transposed
Lsi07g00003 Lsi-Chr7:60412 Lsi10g00033 Lsi-Chr10:550051 1.10E-13 transposed
Lsi10g00033 Lsi-Chr10:550051 Lsi11g01330 Lsi-Chr11:21919157 1.17E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25988 PF06203 CCT 6.50E-16 CL0281 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00033 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0