Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00042 ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACCGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGTTGTGGGCCATGACTACGCTTGGATTCGAAGAGTACGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGTCAACTCTGGTACTGCTGGCGGCGGTGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGTTGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGGTGGTGGATTTCACCACATGGGTATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGTCATCGGTAG 624 54.01 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGANGGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 648177 648800 - Lsi10G000420.1 Lsi10g00042 671599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00042 207 MobiDBLite consensus disorder prediction 1 24 - -
Lsi10g00042 207 Gene3D Histone, subunit A 15 131 IPR009072 GO:0046982
Lsi10g00042 207 MobiDBLite consensus disorder prediction 114 145 - -
Lsi10g00042 207 MobiDBLite consensus disorder prediction 1 21 - -
Lsi10g00042 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 182 - -
Lsi10g00042 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 182 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lsi10g00042 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lsi10g00042 207 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lsi10g00042 207 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lsi10g00042 207 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lsi10g00042 207 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982
Lsi10g00042 207 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02057 Lsi-Chr3:31884978 Lsi10g00042 Lsi-Chr10:648177 2.03E-60 dispersed
Lsi04g00817 Lsi-Chr4:7784892 Lsi10g00042 Lsi-Chr10:648177 5.64E-21 dispersed
Lsi06g01361 Lsi-Chr6:24173027 Lsi10g00042 Lsi-Chr10:648177 1.27E-14 dispersed
Lsi10g00042 Lsi-Chr10:648177 Lsi10g01151 Lsi-Chr10:15837273 4.13E-06 dispersed
Lsi02g02373 Lsi-Chr2:30411328 Lsi10g00042 Lsi-Chr10:648177 2.99E-51 transposed
Lsi05g00494 Lsi-Chr5:6245182 Lsi10g00042 Lsi-Chr10:648177 1.42E-63 transposed
Lsi06g00125 Lsi-Chr6:1215709 Lsi10g00042 Lsi-Chr10:648177 5.02E-33 transposed
Lsi07g00191 Lsi-Chr7:2084961 Lsi10g00042 Lsi-Chr10:648177 2.00E-63 transposed
Lsi10g00042 Lsi-Chr10:648177 Lsi05g00511 Lsi-Chr5:6412401 1.08E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25989 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00042 K08065 - csv:101219076 241.121