Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00055 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTCAAGGTGCTTACTGAGGATGTCTTTGAGCTGGAAGTTTTCTACCGCTAACGGGAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTGTGTTTGTTAAATTCAACTGGAAAATGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGTATAATGTGAATAGTGGAACAAAACAAAAGACCTCGAACTTATTCGACGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAACTTCAAGCTTTAGCTTCCTTGTTATCCGACTCAGATCGGATGTCATCCACTGGGTGCACCGATGATTTTGGATCTGACACATCACAGTTGAATGGAATTGCCTGTGCCCTAAGGTCACTGTACTGGGAGAAAGATTTGCATAAGCAGTATGTATGGGTTGAAGAGAGTGCAGATTCCAATGTTGGGGAGTGTCCAATTCGAACTGAGAAGATCCCTCAAAGTTCTGGCCAATTATTCTCTGATGACATAACTGTTCCATTTGCTACAGACTTATCCGTCTCTTTACTCTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTAAGATGCCTATTAAGAAAGCACTGGAAAAATTTCTGTAGTTCGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATAGCGTTCCAGAAAATATCTGGTTTCCCTCTAAAATTGTGGAACAAGAAACATCCAAAACCAAATCAGCCATTGGTTCATCAACAGCGGGTCTTACTACGGAGAACGCAACATCAACAAGTCAAAGATTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTCCTACGAATATTTATTGTAGTTGGAATTGTCGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGGCAATGCTCTTTCTGTTTGCCATTTGTTTTGTTTCTCCTTTGTCATATAATTTCTTTACTACTGATGAAAAAACATTTGGTGAGTATACAGAAAGAACGGCCTTCGAAAGACCACTGACCAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCATTTTGAGATGATGCATCGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGAAAATTTGGAACCTGCACCAATTCGAGATGAATATGCACCTGTCATATTTTCTCAAGAAACGGTAGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATCTTGCGAGCTAGAGCTTCTGGAAAGGGCGTGCTTACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAACACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCCTCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACCGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCTTTAAGAAGGCACGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACCGCTATCAATTCATCTGTAGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTCATGCAGCCATAAGTCGGATTGCAAAAGTGGAGAATGACTATCACAAGATGATGTGGCTTAAAAGTCGTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTTATGGACACTAACCTTGATTCAAATCAACTGGATTTTGCTCGGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTCATAAATAAGGTTCTCGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATAGTTGATAATGTGCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTTCACCAAATAATTACTCATCTGGTTGGAAATTCACTCAAGTTTACTCGTGAAGAGGGACACATACTAGTCTCAGTGCATCTGGCTGATGAAGTTAGAGGCCCAGTTGATTTCATGGACATTGTGCTTAAACAACGCTCATATGTAGTTGGAGATACATCAAACAATAGTTGTACTACATTCAGTGGGTCACCTGTGGTGGATAGATGGAAAAGCTGGGAAGATTTCAAAAAGTTCAGCAGGACGGATACAGTGGAGGAACCCAAAACGATTAGAATACTCGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCAAGATGCACAAAGCCGAATATTCACACCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATAGGGTTTGTGAGTAAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATCAGCTTTTTGGATACCAGGCGGCCACAGTATGATGTGGGTATTGGAGAGTTCCAGGGGCTAAGAGCATTAATAATCGATGATAGGTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAACTCTGAGTGCAGAGTCTGCTTATCAATATCTATCCAATACCTCCAACATAAGAGCATCGACACAATTGGCCATGATTCTTATAGACAGAGACATTTGGGACAAAGAAGTGGGTCCCAAGTTCGATCTTTCGTTTAAAGAGCATGTGGATAAAAGTGTGACAAATGTCCAGATGAATGGTCCAAAGCTCTTTCTTTTGGCAACCCCCAAAAGCTCCAATGAGCAATATGAACTTAAATCTTCTGGTCATGTAAATAATGTGTTAAGTAAACCTCTTCAGTTAGACGTGTTGGTCAGTTGCTTCCGCGAAGCCTTCGGGATTGAGAAGAGGAATCAAGTAATTATTAAAAAACCATCTACTCTTAGGAATCTGCTGAAAGAAAAGCATATTTTGGTTGTAGATGACAATGCAGTAAACAGACGGGTGGCAGAAGGTGCTCTAAAGAAATATGGAGCCATTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAATCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTTCGCACTGTAGAAAGTGGGGTGAACGTGAGAATTGCATCTGGAGAAGCGTCAACTAAGGATAATAAGGTCCACTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGCTATGACTGAGGAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAGGAGCAACTTTATTCGGCTGTAGCACGTTTTTTTGAGACTGCTTGA 3855 42.13 MWRGCSGGAGVFLKLSRCLLRMSLSWKFSTANGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWIFAVVIVLSSWFSLRSYNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSTGCTDDFGSDTSQLNGIACALRSLYWEKDLHKQYVWVEESADSNVGECPIRTEKIPQSSGQLFSDDITVPFATDLSVSLLSTGNQLCGKIIEQAGVLRCLLRKHWKNFCSSLIGCFWVLLGVIAFQKISGFPLKLWNKKHPKPNQPLVHQQRVLLRRTQHQQVKDSPKGAGKWRKVLLRIFIVVGIVGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQAMLFLFAICFVSPLSYNFFTTDEKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEMMHRWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMWLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFARTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAIVDNVLSPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFHQIITHLVGNSLKFTREEGHILVSVHLADEVRGPVDFMDIVLKQRSYVVGDTSNNSCTTFSGSPVVDRWKSWEDFKKFSRTDTVEEPKTIRILVTVEDTGVGIPQDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSKPGIGSTFSFTVSFQKGEISFLDTRRPQYDVGIGEFQGLRALIIDDRCIRAEVTRYHLQRLGISVDITLSAESAYQYLSNTSNIRASTQLAMILIDRDIWDKEVGPKFDLSFKEHVDKSVTNVQMNGPKLFLLATPKSSNEQYELKSSGHVNNVLSKPLQLDVLVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNRRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRTVESGVNVRIASGEASTKDNKVHWHTPIFAMTADLIQAMTEECLKCGMDGYVAKPFEEEQLYSAVARFFETA 1284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 939481 950360 + Lsi10G000550.1 Lsi10g00055 671612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00055 1284 Gene3D - 651 745 - -
Lsi10g00055 1284 SUPERFAMILY CheY-like 985 1122 IPR011006 -
Lsi10g00055 1284 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 794 964 IPR003594 -
Lsi10g00055 1284 SMART HKATPase_4 794 966 IPR003594 -
Lsi10g00055 1284 ProSiteProfiles Response regulatory domain profile. 990 1122 IPR001789 GO:0000160
Lsi10g00055 1284 PANTHER HISTIDINE KINASE 2 288 1282 - -
Lsi10g00055 1284 PANTHER HISTIDINE KINASE 2 52 123 - -
Lsi10g00055 1284 ProSiteProfiles Response regulatory domain profile. 1146 1281 IPR001789 GO:0000160
Lsi10g00055 1284 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 123 - -
Lsi10g00055 1284 PANTHER TWO-COMPONENT HISTIDINE KINASE 288 1282 - -
Lsi10g00055 1284 SMART REC_2 1145 1277 IPR001789 GO:0000160
Lsi10g00055 1284 SMART HisKA_10 682 747 IPR003661 GO:0000155|GO:0007165
Lsi10g00055 1284 ProSiteProfiles Histidine kinase domain profile. 689 966 IPR005467 -
Lsi10g00055 1284 Pfam His Kinase A (phospho-acceptor) domain 682 747 IPR003661 GO:0000155|GO:0007165
Lsi10g00055 1284 CDD HATPase_EvgS-ArcB-TorS-like 801 962 - -
Lsi10g00055 1284 ProSiteProfiles CHASE domain profile. 397 621 IPR006189 -
Lsi10g00055 1284 Gene3D CHASE domain 401 628 IPR042240 -
Lsi10g00055 1284 PRINTS Bacterial sensor protein C-terminal signature 891 905 IPR004358 GO:0016310|GO:0016772
Lsi10g00055 1284 PRINTS Bacterial sensor protein C-terminal signature 950 963 IPR004358 GO:0016310|GO:0016772
Lsi10g00055 1284 PRINTS Bacterial sensor protein C-terminal signature 926 944 IPR004358 GO:0016310|GO:0016772
Lsi10g00055 1284 PRINTS Bacterial sensor protein C-terminal signature 909 919 IPR004358 GO:0016310|GO:0016772
Lsi10g00055 1284 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 669 748 IPR036097 GO:0000155|GO:0007165
Lsi10g00055 1284 CDD HisKA 682 743 IPR003661 GO:0000155|GO:0007165
Lsi10g00055 1284 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 736 962 IPR036890 -
Lsi10g00055 1284 CDD REC_hyHK_CKI1_RcsC-like 1147 1277 - -
Lsi10g00055 1284 Gene3D - 746 968 IPR036890 -
Lsi10g00055 1284 Gene3D - 84 126 - -
Lsi10g00055 1284 Gene3D - 325 377 - -
Lsi10g00055 1284 Pfam Response regulator receiver domain 1147 1277 IPR001789 GO:0000160
Lsi10g00055 1284 Pfam CHASE domain 401 594 IPR006189 -
Lsi10g00055 1284 Gene3D - 1140 1284 - -
Lsi10g00055 1284 SMART CHASE_2 397 596 IPR006189 -
Lsi10g00055 1284 SUPERFAMILY CheY-like 1143 1281 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00055 Lsi-Chr10:939481 Lsi11g00636 Lsi-Chr11:6707569 6.10E-20 dispersed
Lsi04g01364 Lsi-Chr4:21402488 Lsi10g00055 Lsi-Chr10:939481 3.11E-51 transposed
Lsi05g01696 Lsi-Chr5:24521450 Lsi10g00055 Lsi-Chr10:939481 2.12E-08 transposed
Lsi09g01720 Lsi-Chr9:25778254 Lsi10g00055 Lsi-Chr10:939481 0 transposed
Lsi11g00010 Lsi-Chr11:74604 Lsi10g00055 Lsi-Chr10:939481 2.96E-137 transposed
Lsi11g00833 Lsi-Chr11:10410421 Lsi10g00055 Lsi-Chr10:939481 1.33E-09 transposed
Lsi11g01345 Lsi-Chr11:22083090 Lsi10g00055 Lsi-Chr10:939481 6.68E-06 transposed
Lsi10g00055 Lsi-Chr10:939481 Lsi11g01360 Lsi-Chr11:22210127 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25991 PF03924 CHASE 7.20E-35 CL0165 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00055 K14489 - csv:101221294 2246.47