Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00057 | ATGTCAAAGAGATTATGTTATCAGCCACTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATTCCAGTTCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGGTATTGCACTCTGGAGTCATCCTCAGGAAGCCACAGCTATCCAGCTCGCAACTCAACATCGACTGTCACTTTCTCACCTAATGGGAGTCCGGTATCGCAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCGCCTGATAATACATATGGTTCCTCAGTAAGTGGATCCAGCATAACAGATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTATTGATAGTTTTGGTAGCATCTACCAGGAGGGAACAGACAATCCAGAGGTGGGAACTTGGGGACAAGTGATGGGTGCTATTACTAAAGGAAACTTAAAAAAGATCCTAATAGCTTGTGCTGAAGCTGTATCAGATAACGATGCGTTGATGGCAGAATGGCTTATGGATGAGTTGCGCAAGATGGTGTCGGTTTGTGGTGAACCGATGCAGAGGTTAGGAGCTTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAGCTCCTCTCATATATGCACCTTCTTTACGAGGTTTGCCCGTACTTCAAATTTGGGTACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACGGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCAAAGTTATTTAACGTGCCATTCGAGTTTCACTCTGCTGCCATTTCTGGCTGCAATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCTGTGAATTTTGCATTCATGCTACATCATATGCCAGATGAGAGCGTAAGCACGGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTATCTCCAAAAGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTTTCCCCGGTTCATCGAGACACTGGATTACTACAACGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGGAGAAGGAGCGAATTAACATCGAGCAGCATTGTTTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACACGAATTACTGGGAAAATGGAGACTCCGATTTGCCATGGCAGGATTTACACCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAAAGAGAAGGGGCTTTGTATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCCTGTGCATGGAAGTGA | 1605 | 44.8 | MSKRLCYQPLQEVDAYCFSQFQTLGRQLYSSSGNQRAQFNVQDIGDRYCTLESSSGSHSYPARNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITDDISDFRHKLLELETVMLGPDSDVIDSFGSIYQEGTDNPEVGTWGQVMGAITKGNLKKILIACAEAVSDNDALMAEWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCNVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQEKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 977937 | 979541 | + | Lsi10G000570.1 | Lsi10g00057 | 671614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00057 | 534 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 10 | 534 | IPR005202 | - | |
| Lsi10g00057 | 534 | Pfam | GRAS domain family | 164 | 534 | IPR005202 | - | |
| Lsi10g00057 | 534 | ProSiteProfiles | GRAS family profile. | 155 | 534 | IPR005202 | - | |
| Lsi10g00057 | 534 | MobiDBLite | consensus disorder prediction | 53 | 105 | - | - | |
| Lsi10g00057 | 534 | PANTHER | SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 | 10 | 534 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01346 | Lsi-Chr2:17994281 | Lsi10g00057 | Lsi-Chr10:977937 | 1.44E-68 | dispersed | |
| Lsi03g02114 | Lsi-Chr3:32371065 | Lsi10g00057 | Lsi-Chr10:977937 | 3.73E-73 | dispersed | |
| Lsi10g01389 | Lsi-Chr10:18010515 | Lsi10g00057 | Lsi-Chr10:977937 | 8.58E-66 | dispersed | |
| Lsi01g00488 | Lsi-Chr1:4030838 | Lsi10g00057 | Lsi-Chr10:977937 | 0 | transposed | |
| Lsi01g00897 | Lsi-Chr1:7231061 | Lsi10g00057 | Lsi-Chr10:977937 | 3.24E-55 | transposed | |
| Lsi01g00910 | Lsi-Chr1:7355238 | Lsi10g00057 | Lsi-Chr10:977937 | 4.88E-45 | transposed | |
| Lsi02g02011 | Lsi-Chr2:26071675 | Lsi10g00057 | Lsi-Chr10:977937 | 2.33E-153 | transposed | |
| Lsi02g02902 | Lsi-Chr2:35244960 | Lsi10g00057 | Lsi-Chr10:977937 | 1.02E-24 | transposed | |
| Lsi03g00413 | Lsi-Chr3:4715972 | Lsi10g00057 | Lsi-Chr10:977937 | 1.63E-88 | transposed | |
| Lsi04g00050 | Lsi-Chr4:646101 | Lsi10g00057 | Lsi-Chr10:977937 | 8.92E-69 | transposed | |
| Lsi04g01253 | Lsi-Chr4:19527943 | Lsi10g00057 | Lsi-Chr10:977937 | 1.48E-175 | transposed | |
| Lsi05g00365 | Lsi-Chr5:4639927 | Lsi10g00057 | Lsi-Chr10:977937 | 2.16E-66 | transposed | |
| Lsi06g00550 | Lsi-Chr6:6937613 | Lsi10g00057 | Lsi-Chr10:977937 | 3.98E-65 | transposed | |
| Lsi06g00916 | Lsi-Chr6:18881611 | Lsi10g00057 | Lsi-Chr10:977937 | 1.19E-65 | transposed | |
| Lsi07g00202 | Lsi-Chr7:2173708 | Lsi10g00057 | Lsi-Chr10:977937 | 2.92E-58 | transposed | |
| Lsi07g01305 | Lsi-Chr7:19027646 | Lsi10g00057 | Lsi-Chr10:977937 | 5.30E-35 | transposed | |
| Lsi08g00416 | Lsi-Chr8:11607386 | Lsi10g00057 | Lsi-Chr10:977937 | 2.36E-45 | transposed | |
| Lsi09g00084 | Lsi-Chr9:721163 | Lsi10g00057 | Lsi-Chr10:977937 | 3.87E-77 | transposed | |
| Lsi09g00666 | Lsi-Chr9:7460521 | Lsi10g00057 | Lsi-Chr10:977937 | 5.37E-70 | transposed | |
| Lsi09g00929 | Lsi-Chr9:11528705 | Lsi10g00057 | Lsi-Chr10:977937 | 1.30E-68 | transposed | |
| Lsi10g00554 | Lsi-Chr10:8093732 | Lsi10g00057 | Lsi-Chr10:977937 | 7.30E-50 | transposed | |
| Lsi11g01489 | Lsi-Chr11:23385384 | Lsi10g00057 | Lsi-Chr10:977937 | 4.76E-43 | transposed | |
| Lsi10g00057 | Lsi-Chr10:977937 | Lsi05g00522 | Lsi-Chr5:6546210 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25992 | PF03514 | GRAS | 1.80E-135 | CL0063 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00057 | - | - | csv:101221914 | 1030.78 |