Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00057 ATGTCAAAGAGATTATGTTATCAGCCACTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATTCCAGTTCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGGTATTGCACTCTGGAGTCATCCTCAGGAAGCCACAGCTATCCAGCTCGCAACTCAACATCGACTGTCACTTTCTCACCTAATGGGAGTCCGGTATCGCAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCGCCTGATAATACATATGGTTCCTCAGTAAGTGGATCCAGCATAACAGATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTATTGATAGTTTTGGTAGCATCTACCAGGAGGGAACAGACAATCCAGAGGTGGGAACTTGGGGACAAGTGATGGGTGCTATTACTAAAGGAAACTTAAAAAAGATCCTAATAGCTTGTGCTGAAGCTGTATCAGATAACGATGCGTTGATGGCAGAATGGCTTATGGATGAGTTGCGCAAGATGGTGTCGGTTTGTGGTGAACCGATGCAGAGGTTAGGAGCTTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAGCTCCTCTCATATATGCACCTTCTTTACGAGGTTTGCCCGTACTTCAAATTTGGGTACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACGGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCAAAGTTATTTAACGTGCCATTCGAGTTTCACTCTGCTGCCATTTCTGGCTGCAATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCTGTGAATTTTGCATTCATGCTACATCATATGCCAGATGAGAGCGTAAGCACGGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTATCTCCAAAAGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTTTCCCCGGTTCATCGAGACACTGGATTACTACAACGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGGAGAAGGAGCGAATTAACATCGAGCAGCATTGTTTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACACGAATTACTGGGAAAATGGAGACTCCGATTTGCCATGGCAGGATTTACACCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAAAGAGAAGGGGCTTTGTATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCCTGTGCATGGAAGTGA 1605 44.8 MSKRLCYQPLQEVDAYCFSQFQTLGRQLYSSSGNQRAQFNVQDIGDRYCTLESSSGSHSYPARNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITDDISDFRHKLLELETVMLGPDSDVIDSFGSIYQEGTDNPEVGTWGQVMGAITKGNLKKILIACAEAVSDNDALMAEWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCNVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQEKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 977937 979541 + Lsi10G000570.1 Lsi10g00057 671614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00057 534 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 534 IPR005202 -
Lsi10g00057 534 Pfam GRAS domain family 164 534 IPR005202 -
Lsi10g00057 534 ProSiteProfiles GRAS family profile. 155 534 IPR005202 -
Lsi10g00057 534 MobiDBLite consensus disorder prediction 53 105 - -
Lsi10g00057 534 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 10 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00057 - - - csv:101221914 1030.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01346 Lsi-Chr2:17994281 Lsi10g00057 Lsi-Chr10:977937 1.44E-68 dispersed
Lsi03g02114 Lsi-Chr3:32371065 Lsi10g00057 Lsi-Chr10:977937 3.73E-73 dispersed
Lsi10g01389 Lsi-Chr10:18010515 Lsi10g00057 Lsi-Chr10:977937 8.58E-66 dispersed
Lsi01g00488 Lsi-Chr1:4030838 Lsi10g00057 Lsi-Chr10:977937 0 transposed
Lsi01g00897 Lsi-Chr1:7231061 Lsi10g00057 Lsi-Chr10:977937 3.24E-55 transposed
Lsi01g00910 Lsi-Chr1:7355238 Lsi10g00057 Lsi-Chr10:977937 4.88E-45 transposed
Lsi02g02011 Lsi-Chr2:26071675 Lsi10g00057 Lsi-Chr10:977937 2.33E-153 transposed
Lsi02g02902 Lsi-Chr2:35244960 Lsi10g00057 Lsi-Chr10:977937 1.02E-24 transposed
Lsi03g00413 Lsi-Chr3:4715972 Lsi10g00057 Lsi-Chr10:977937 1.63E-88 transposed
Lsi04g00050 Lsi-Chr4:646101 Lsi10g00057 Lsi-Chr10:977937 8.92E-69 transposed
Lsi04g01253 Lsi-Chr4:19527943 Lsi10g00057 Lsi-Chr10:977937 1.48E-175 transposed
Lsi05g00365 Lsi-Chr5:4639927 Lsi10g00057 Lsi-Chr10:977937 2.16E-66 transposed
Lsi06g00550 Lsi-Chr6:6937613 Lsi10g00057 Lsi-Chr10:977937 3.98E-65 transposed
Lsi06g00916 Lsi-Chr6:18881611 Lsi10g00057 Lsi-Chr10:977937 1.19E-65 transposed
Lsi07g00202 Lsi-Chr7:2173708 Lsi10g00057 Lsi-Chr10:977937 2.92E-58 transposed
Lsi07g01305 Lsi-Chr7:19027646 Lsi10g00057 Lsi-Chr10:977937 5.30E-35 transposed
Lsi08g00416 Lsi-Chr8:11607386 Lsi10g00057 Lsi-Chr10:977937 2.36E-45 transposed
Lsi09g00084 Lsi-Chr9:721163 Lsi10g00057 Lsi-Chr10:977937 3.87E-77 transposed
Lsi09g00666 Lsi-Chr9:7460521 Lsi10g00057 Lsi-Chr10:977937 5.37E-70 transposed
Lsi09g00929 Lsi-Chr9:11528705 Lsi10g00057 Lsi-Chr10:977937 1.30E-68 transposed
Lsi10g00554 Lsi-Chr10:8093732 Lsi10g00057 Lsi-Chr10:977937 7.30E-50 transposed
Lsi11g01489 Lsi-Chr11:23385384 Lsi10g00057 Lsi-Chr10:977937 4.76E-43 transposed
Lsi10g00057 Lsi-Chr10:977937 Lsi05g00522 Lsi-Chr5:6546210 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g02114 . 240 919 GRAS Transcription Factor Family AT2G37650 54.3 1.3e-199 693.3
Lsi02g01346 . 315 697 GRAS Transcription Factor Family AT3G46600 56.7 1.4e-126 450.3
Lsi01g00910 . 58 477 GRAS Transcription Factor Family AT3G49950 59.1 2.0e-133 472.6
Lsi07g00218 . 72 532 GRAS Transcription Factor Family AT4G36710 52.3 2.3e-120 429.5
Lsi07g00800 . 21 444 GRAS Transcription Factor Family AT5G41920 65.8 4.4e-149 524.6
Lsi01g01649 . 464 840 GRAS Transcription Factor Family AT5G41920 56.6 2.5e-115 412.5
Lsi01g00680 CCT 1 609 GRAS Transcription Factor Family AT5G66770 57.5 6.8e-175 610.9
Lsi07g00202 CCT 8 537 GRAS Transcription Factor Family AT5G66770 59.0 1.4e-164 576.6
Lsi05g00522 . 62 561 GRAS Transcription Factor Family AT1G50600 58.7 1.2e-162 570.1
Lsi10g00057 . 46 534 GRAS Transcription Factor Family AT1G50600 59.4 2.0e-162 569.3
Lsi01g00488 . 111 549 GRAS Transcription Factor Family AT1G50600 57.0 6.8e-142 501.1
Lsi04g01253 . 279 649 GRAS Transcription Factor Family AT1G50600 61.2 1.2e-133 473.8
Lsi02g02011 . 190 570 GRAS Transcription Factor Family AT1G50600 50.9 9.0e-110 394.4
Lsi07g01415 . 1 638 GRAS Transcription Factor Family AT1G63100 50.4 1.1e-162 570.5
Lsi09g00666 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.9e-208 722.2
Lsi09g00929 . 47 596 GRAS Transcription Factor Family AT1G14920 61.2 4.3e-184 641.3
Lsi05g00365 . 27 553 GRAS Transcription Factor Family AT1G14920 56.2 1.9e-155 546.2
Lsi07g01390 . 1 377 GRAS Transcription Factor Family AT1G55580 50.9 1.2e-102 370.5
Lsi09g00929 . 47 593 GRAS Transcription Factor Family AT1G66350 60.9 2.0e-178 622.5
Lsi09g00666 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 6.6e-174 607.4
Lsi05g00365 . 1 555 GRAS Transcription Factor Family AT1G66350 55.3 9.2e-160 560.5
Lsi10g01389 . 198 718 GRAS Transcription Factor Family AT1G07520 50.1 4.5e-141 498.4
Lsi10g00057 . 8 534 GRAS Transcription Factor Family AT5G48150 64.9 1.6e-190 662.5
Lsi05g00522 . 34 561 GRAS Transcription Factor Family AT5G48150 59.2 2.0e-175 612.5
Lsi01g00488 . 16 549 GRAS Transcription Factor Family AT5G48150 52.4 1.2e-151 533.5
Lsi04g01253 . 181 649 GRAS Transcription Factor Family AT5G48150 53.5 8.6e-139 490.7
Lsi09g00666 . 46 578 GRAS Transcription Factor Family AT2G01570 68.9 3.7e-213 738.0
Lsi09g00929 . 48 594 GRAS Transcription Factor Family AT2G01570 63.0 4.9e-189 657.9
Lsi05g00365 . 28 553 GRAS Transcription Factor Family AT2G01570 58.7 2.3e-162 569.3
Lsi09g00929 . 47 593 GRAS Transcription Factor Family AT1G66350 60.9 2.0e-178 622.5
Lsi09g00666 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 6.6e-174 607.4
Lsi05g00365 . 1 555 GRAS Transcription Factor Family AT1G66350 55.3 9.2e-160 560.5
Lsi09g00929 . 48 594 GRAS Transcription Factor Family AT3G03450 61.5 5.5e-179 624.4
Lsi09g00666 . 10 578 GRAS Transcription Factor Family AT3G03450 58.1 1.9e-171 599.4
Lsi05g00365 . 28 553 GRAS Transcription Factor Family AT3G03450 56.5 1.8e-153 539.7
Lsi09g00929 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 6.1e-159 557.8
Lsi09g00666 . 42 578 GRAS Transcription Factor Family AT5G17490 57.2 8.2e-156 547.4
Lsi05g00365 . 29 553 GRAS Transcription Factor Family AT5G17490 52.1 8.9e-134 474.2
Lsi02g02011 . 1 570 GRAS Transcription Factor Family AT1G21450 57.4 6.9e-175 610.9
Lsi10g00057 . 159 534 GRAS Transcription Factor Family AT1G21450 52.5 2.8e-115 412.9
Lsi05g00522 . 185 561 GRAS Transcription Factor Family AT1G21450 53.2 6.1e-115 411.8
Lsi02g01346 . 323 697 GRAS Transcription Factor Family AT5G59450 57.0 2.2e-128 456.4
Lsi03g02114 . 470 919 GRAS Transcription Factor Family AT5G59450 50.3 2.2e-123 439.9
Lsi01g00488 . 1 549 GRAS Transcription Factor Family AT4G17230 58.5 6.1e-175 610.9
Lsi10g00057 . 15 534 GRAS Transcription Factor Family AT4G17230 51.6 1.1e-144 510.4
Lsi05g00522 . 66 561 GRAS Transcription Factor Family AT4G17230 52.1 3.3e-136 482.3
Lsi04g01253 . 276 649 GRAS Transcription Factor Family AT4G17230 52.9 2.2e-111 399.8
Lsi10g00057 . 155 534 GRAS Transcription Factor Family AT2G04890 71.1 1.4e-158 556.2
Lsi05g00522 . 165 561 GRAS Transcription Factor Family AT2G04890 59.9 6.3e-143 504.2
Lsi04g01253 . 263 649 GRAS Transcription Factor Family AT2G04890 55.7 5.7e-128 454.5
Lsi01g00488 . 169 549 GRAS Transcription Factor Family AT2G04890 58.5 2.7e-125 445.7
Lsi06g00550 . 1 466 GRAS Transcription Factor Family AT1G50420 66.1 2.8e-174 608.6
Lsi04g00050 . 24 485 GRAS Transcription Factor Family AT1G50420 60.9 3.4e-156 548.5
Lsi07g01305 . 430 793 GRAS Transcription Factor Family AT4G00150 55.7 5.4e-105 378.6
Lsi07g00202 CCT 9 537 GRAS Transcription Factor Family AT3G50650 53.5 4.7e-146 515.0
Lsi01g01649 . 237 838 GRAS Transcription Factor Family AT3G54220 63.7 3.9e-203 704.9
Lsi07g00800 . 77 442 GRAS Transcription Factor Family AT3G54220 64.5 3.4e-135 479.2
Lsi01g00897 . 101 492 GRAS Transcription Factor Family AT4G37650 67.8 2.0e-157 552.7
Lsi10g00554 . 126 508 GRAS Transcription Factor Family AT4G37650 56.2 1.6e-119 426.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003195 1 8 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25992 PF03514 GRAS 1.80E-135 CL0063 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00057 Lsi_Chr10 FPKM 0.4689 0.296402 0.38813 0.786298 1.033231 1.127135 1.178875 2.243342 2.296499 2.490196