Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00058 | ATGCCAGCTGAAAACTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTCGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTAAAGAAAGTTTATAGGGCATTCGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCTGAGGTTCAGCTGCTGAGTACTTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAACCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGCGATCTAGGCTTTGCAGCTATAGTTGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTAGATATATACTCCTTTGCGATGTGTTTGCTCGAGATGGTTACTATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAAATATACAAGAAGGTTACAACTGGAATAAAGCCCCAAGCAATAACCAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAGCCAAGGGCAAGACCTTCAGCTTCTGAACTTCTCAAGGATCCCTTCTTTGACGAAGTCAGGGATGAAGATTCTGAACAGACTTATTAA | 891 | 41.98 | MPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAITKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQTY | 296 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 983975 | 986444 | + | Lsi10G000580.1 | Lsi10g00058 | 671615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00058 | 296 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 107 | - | - | |
| Lsi10g00058 | 296 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 290 | - | - | |
| Lsi10g00058 | 296 | ProSiteProfiles | Protein kinase domain profile. | 26 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi10g00058 | 296 | Pfam | Protein kinase domain | 30 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi10g00058 | 296 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 1 | 288 | - | - | |
| Lsi10g00058 | 296 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 285 | IPR011009 | - | |
| Lsi10g00058 | 296 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED | 1 | 288 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi10g00058 | Lsi-Chr10:983975 | Lsi10g01482 | Lsi-Chr10:18920267 | 2.11E-109 | dispersed | |
| Lsi10g00058 | Lsi-Chr10:983975 | Lsi05g00526 | Lsi-Chr5:6578882 | 9.96E-157 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 83934 | PF00069 | Pkinase | 1.00E-50 | CL0016 | Lsi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00058 | K08867 | - | csv:101222153 | 600.512 |