Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00083 ATGATCGAGAAAATGGCGGCCGACCACGAATTCTCAGATTGTTTTCTCCAAATCCCGCTCGCCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGCTGTCGCCGAAGACATTGATGGCGACGAACCGATTCGTGTGTGAAATATGTGGGAAAGGGTTTCAGAGAGACCAAAACTTACAACTACACAGACGAGGACATAATCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTTTGTCCTGAAAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATATGCTGTACAGTCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATCACTCACAGAGCATTCTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGTGGGAGGCTGCAGAGATGATGAAACAGGGTTATTGATGGGTCAACATTTGGGTTCAATTTTGAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGTAATGGGGTTTGTTTAAGAAGCAATAATAATTACAACAATGTTCAAATGATTGGAGGAATGATGATGACGATGAATAATAATAATAATTCAGGAGGAGTAATGTACTGTACTGAAGATCCACTTTGGGGAAACCCAATACAAATGGGTGATTATAATCAAAATCAAGGGTTATTAATGAATAATGTGGGAGGAGTTTCTTCATTATACAGCCATCAATTACAGCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCAACAACATCTGCCCCATTATCACTGTTACAACTACAACAACAACAACAGGGGTTTTTGTTTAATAATGGGAGTGAGTATTGTAATTCTTCAAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGGGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAATTTGAGTGTGGAAATGGAAGTGGAACAATAGGAGCAGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAGAACTATATGTCACGCCTCAGCATCAATCAACGGATGGATTTAG 1311 40.35 MIEKMAADHEFSDCFLQIPLAGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTTISNNFNYNLMGVGGCRDDETGLLMGQHLGSILKPISVKEATMAISSNGVCLRSNNNYNNVQMIGGMMMTMNNNNNSGGVMYCTEDPLWGNPIQMGDYNQNQGLLMNNVGGVSSLYSHQLQQTQMGNMSATALLQKAAEIGPTSSTTSAPLSLLQLQQQQQGFLFNNGSEYCNSSSTTNPIVVVENGNNGMYTAKRRRTESEFECGNGSGTIGAGETRDFLGVGARTICHASASINGWI 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1365870 1367700 - Lsi10G000830.1 Lsi10g00083 671640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00083 436 Gene3D Classic Zinc Finger 54 81 - -
Lsi10g00083 436 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lsi10g00083 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lsi10g00083 436 PANTHER ZINC FINGER PROTEIN MAGPIE 25 429 - -
Lsi10g00083 436 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Lsi10g00083 436 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 429 - -
Lsi10g00083 436 Gene3D Classic Zinc Finger 92 182 - -
Lsi10g00083 436 SMART c2h2final6 58 80 IPR013087 -
Lsi10g00083 436 SMART c2h2final6 134 154 IPR013087 -
Lsi10g00083 436 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01427 Lsi-Chr2:19797763 Lsi10g00083 Lsi-Chr10:1365870 2.29E-102 dispersed
Lsi02g01428 Lsi-Chr2:19802662 Lsi10g00083 Lsi-Chr10:1365870 2.29E-102 dispersed
Lsi03g02034 Lsi-Chr3:31704220 Lsi10g00083 Lsi-Chr10:1365870 3.53E-118 dispersed
Lsi07g00577 Lsi-Chr7:6115656 Lsi10g00083 Lsi-Chr10:1365870 3.13E-118 dispersed
Lsi08g01410 Lsi-Chr8:22345397 Lsi10g00083 Lsi-Chr10:1365870 6.68E-106 dispersed
Lsi10g00083 Lsi-Chr10:1365870 Lsi11g00037 Lsi-Chr11:399348 1.66E-102 dispersed
Lsi10g00083 Lsi-Chr10:1365870 Lsi11g01399 Lsi-Chr11:22539126 1.25E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25996 PF00096 zf-C2H2 0.0018 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00083 K25870 - csv:101211656 632.484