Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00087 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTAAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTCTTCGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCATCCTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTACTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGGCTGAGCCTGAACTCCGTTGCGTTCTTGCCAGCAATCCGTCAAACTGTGTACAGCTTATAATCTGGTTTCTGTTGGGACCCATGTCCGCAAGCCCGTTTCTTCAAAAATTTGACTATGGCCTGTTACTGATTGATTCAATCATAAGGTTTATGTTTTTAAATTGGTTAAAAGGAGGAGATTTTAAGGATGGTTTTTGTAGTCCAGAGCTCTTACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCGCCTTCAGATCTACAGAACTATTCGTTTTACAAATCGGACATAGCTACTCAGTCTAATTGTCAAAGTTTCAAATTAGATCAAAACTTTGAGCAGACTACGGTGGCCAGTATGGATGATGTGTCTACTTTGAATTGCCATATATTGAACTCACATCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACATAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCCGAGCTTTTTGATATTACATTTCTTGAGGGAGAGACAATCAGGGAATGGCTCTATTTCGACAAGCCTCGACGAGCCTTTGAGAGTGGCAATCGAAAACAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGCGGTCAGAAGAAGTCTTATTACATGGATCCACAACCATCAAGCTCTCTTGAATGGCACTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGTATGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAAGATTACGACAAAGGCGAATAATAAAAAGCCTGATTCTGCAAATATCAACCTTGCTCCGCATCATCAGAATATGACAAACACTAACTGA 1593 43.31 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVFEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKAEPELRCVLASNPSNCVQLIIWFLLGPMSASPFLQKFDYGLLLIDSIIRFMFLNWLKGGDFKDGFCSPELLQDSFLGFEECKVSPSDLQNYSFYKSDIATQSNCQSFKLDQNFEQTTVASMDDVSTLNCHILNSHPEFDYGVLIGASDVGDFSQDIKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKYADAKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGKITTKANNKKPDSANINLAPHHQNMTNTN 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1457206 1460401 + Lsi10G000870.1 Lsi10g00087 671644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00087 530 PANTHER TRANSCRIPTION FACTOR VOZ2 1 509 - -
Lsi10g00087 530 MobiDBLite consensus disorder prediction 502 530 - -
Lsi10g00087 530 Coils Coil 18 38 - -
Lsi10g00087 530 MobiDBLite consensus disorder prediction 499 530 - -
Lsi10g00087 530 PANTHER TRANSCRIPTION FACTOR VOZ1 1 509 IPR039277 GO:0006355|GO:0048578
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00087 - - - csv:101211467 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00276 Lsi-Chr1:2456480 Lsi10g00087 Lsi-Chr10:1457206 1.25E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00276 . 2 492 VOZ-9 Transcription Factor Family AT1G28520 70.4 2.5e-199 691.8
Lsi10g00087 . 6 494 VOZ-9 Transcription Factor Family AT1G28520 53.2 2.9e-131 465.7
Lsi01g00276 . 27 432 VOZ-9 Transcription Factor Family AT2G42400 50.7 4.8e-104 375.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25997 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00087 Lsi_Chr10 FPKM 20.247091 22.937252 16.042759 16.492506 5.128934 5.719098 6.743337 2.148851 2.295991 1.753744