Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00087 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTAAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTCTTCGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCATCCTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTACTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGGCTGAGCCTGAACTCCGTTGCGTTCTTGCCAGCAATCCGTCAAACTGTGTACAGCTTATAATCTGGTTTCTGTTGGGACCCATGTCCGCAAGCCCGTTTCTTCAAAAATTTGACTATGGCCTGTTACTGATTGATTCAATCATAAGGTTTATGTTTTTAAATTGGTTAAAAGGAGGAGATTTTAAGGATGGTTTTTGTAGTCCAGAGCTCTTACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCGCCTTCAGATCTACAGAACTATTCGTTTTACAAATCGGACATAGCTACTCAGTCTAATTGTCAAAGTTTCAAATTAGATCAAAACTTTGAGCAGACTACGGTGGCCAGTATGGATGATGTGTCTACTTTGAATTGCCATATATTGAACTCACATCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACATAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCCGAGCTTTTTGATATTACATTTCTTGAGGGAGAGACAATCAGGGAATGGCTCTATTTCGACAAGCCTCGACGAGCCTTTGAGAGTGGCAATCGAAAACAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGCGGTCAGAAGAAGTCTTATTACATGGATCCACAACCATCAAGCTCTCTTGAATGGCACTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGTATGCTGATGCAAAGAAGAGTCCAAAGGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAAGATTACGACAAAGGCGAATAATAAAAAGCCTGATTCTGCAAATATCAACCTTGCTCCGCATCATCAGAATATGACAAACACTAACTGA 1593 43.31 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVFEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKAEPELRCVLASNPSNCVQLIIWFLLGPMSASPFLQKFDYGLLLIDSIIRFMFLNWLKGGDFKDGFCSPELLQDSFLGFEECKVSPSDLQNYSFYKSDIATQSNCQSFKLDQNFEQTTVASMDDVSTLNCHILNSHPEFDYGVLIGASDVGDFSQDIKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKYADAKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGKITTKANNKKPDSANINLAPHHQNMTNTN 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1457206 1460401 + Lsi10G000870.1 Lsi10g00087 671644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00087 530 PANTHER TRANSCRIPTION FACTOR VOZ2 1 509 - -
Lsi10g00087 530 MobiDBLite consensus disorder prediction 502 530 - -
Lsi10g00087 530 Coils Coil 18 38 - -
Lsi10g00087 530 MobiDBLite consensus disorder prediction 499 530 - -
Lsi10g00087 530 PANTHER TRANSCRIPTION FACTOR VOZ1 1 509 IPR039277 GO:0006355|GO:0048578
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00276 Lsi-Chr1:2456480 Lsi10g00087 Lsi-Chr10:1457206 1.25E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25997 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00087 - - csv:101211467 869.766