Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00114 ATGGATTGGACTAGAGGCCACGTCATTGGCCACGGCTCCTCCGCCACCGTCTTTCTCGCCACCGCTTCTCCCTCCGGCGAAGTCTTCGCCGTCAAATCCGCCGAGCTTTCACACTCGCAATCTCTACAAAGAGAGCAACAGTTTCTTTCTTCTTTAGCCTCTCCTTATATAGTTTCTTACAGAGGCTTTGATGTTCGTAGAGAACAGAGTGGGATTATGATGTTTAATCTTTTCATGGAGTATTTTCCCAACGGTTCGCTCGCCGATGTAATTCGCCGCCGTGGAGGGCGGCAGCTCGATGAGGCGACGATCGGAATCTACACACGGCAGTTACTAATGGGTCTGCAGTACATTCATTCCAAAGGCTTAGTACATTGCGACATTAAAGCCCGAAACATTTTGATTGGTCGAGACGGTGCAGCTAAATTGGCTGATTTCGGCTGCGCCAAGTGGGCGACGGGCCAAACCGATCCAATTGGCGGCACGCCGTTGTTCATGGCGCCGGAAGTGGCTCGTGGTGAACAACAAGGTTTCGCCTCCGACATTTGGTCAATTGGGTGTACAATTGTCGAAATGGCCACCGGCGGCAGCTCACCCTGGCCGAAAACAATCGACGACACCGACCCGATTTCCGCCCTTTACCGAATTGGGTATTCCGGCGAGTCGCCGGAAATTCCAAGTTTTTTATCCGAGGAAGCAAAGGATTTGTTAGAGAAGTGCTTAAAAAGGAATCCAAGTGAGAGATGGACAGCCAATCAGCTAGTGAATCACCCATTTTTAAGGGAATTGAATTCCACAACACCAAAGAAAATCCAGGAAGTTCATTCAGATTCCCCAACGAGTATTCTAGAACAGGGGATTTGGAGGTCAATTGAAGAAAGTGAAATTAGAGAAAGCAAAATAAGTAGATCCAATGGTTGGACGGAAGCGGCGGCAGCAGCAGCAGCAGCAGCAGAGCAGATCCGACGGCTGTGGATGGTTTCAGGAGAGGCGAGATGGAGAGAGGAGGATGAGAATTGGATTACAATTAGAAGAAAAGAGAAAGTGGGTGATGAAAGGGAGATGATTGGTGGGTCAGAAGTGAAAAAATGTAGTAATAAAGAGAATAGTTGGGGCTCGAAACAGAGAGTTAGTGGCGGCAAAGAGTGGTTGGAAATGGAATTTGGGAATATTAGTTGTAAAATTAGTAGGAATGATTTAGAAGACCATAGTTGTAGGAATATTATTAGTCTTGTAAATAATAATAATCCTTTATCTTTTCATACACTTACACCTAAATTTCTTCATTTAATGCCAACTATATTATGA 1308 46.02 MDWTRGHVIGHGSSATVFLATASPSGEVFAVKSAELSHSQSLQREQQFLSSLASPYIVSYRGFDVRREQSGIMMFNLFMEYFPNGSLADVIRRRGGRQLDEATIGIYTRQLLMGLQYIHSKGLVHCDIKARNILIGRDGAAKLADFGCAKWATGQTDPIGGTPLFMAPEVARGEQQGFASDIWSIGCTIVEMATGGSSPWPKTIDDTDPISALYRIGYSGESPEIPSFLSEEAKDLLEKCLKRNPSERWTANQLVNHPFLRELNSTTPKKIQEVHSDSPTSILEQGIWRSIEESEIRESKISRSNGWTEAAAAAAAAAEQIRRLWMVSGEARWREEDENWITIRRKEKVGDEREMIGGSEVKKCSNKENSWGSKQRVSGGKEWLEMEFGNISCKISRNDLEDHSCRNIISLVNNNNPLSFHTLTPKFLHLMPTIL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1804629 1805936 + Lsi10G001140.1 Lsi10g00114 671671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00114 435 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lsi10g00114 435 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00114 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lsi10g00114 435 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00114 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 18 2 361 - -
Lsi10g00114 435 SUPERFAMILY Protein kinase-like (PK-like) 2 284 IPR011009 -
Lsi10g00114 435 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Lsi10g00114 435 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Lsi10g00114 435 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Lsi10g00114 435 Gene3D Transferase(Phosphotransferase) domain 1 2 337 - -
Lsi10g00114 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 361 - -
Lsi10g00114 435 CDD STKc_MAPKKK 2 260 - -
Lsi10g00114 435 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00972 Lsi-Chr1:7933161 Lsi10g00114 Lsi-Chr10:1804629 5.72E-69 dispersed
Lsi10g00114 Lsi-Chr10:1804629 Lsi10g00532 Lsi-Chr10:7625178 5.07E-54 dispersed
Lsi02g01269 Lsi-Chr2:16870314 Lsi10g00114 Lsi-Chr10:1804629 7.41E-66 transposed
Lsi02g01893 Lsi-Chr2:24833368 Lsi10g00114 Lsi-Chr10:1804629 5.94E-100 transposed
Lsi01g00445 Lsi-Chr1:3704520 Lsi10g00114 Lsi-Chr10:1804629 4.04E-101 wgd
Lsi10g00114 Lsi-Chr10:1804629 Lsi11g01440 Lsi-Chr11:22938320 1.13E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83935 PF00069 Pkinase 3.20E-57 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00114 K20716 - csv:101208274 679.863