Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00138 ATGCGGAAACCGATAAGGTGGATCTGGTTAGGGAAGAACGATGGATTTGAAGAAGCCATTATTAAAAGCTCCCGAGAAGCTAGAGAACTCTTTAATTCAGTGACTGGAGTGTGGTTCGATGGCTCTCGAGGAAAAAAACTCTGCGGTTCAGTGATTCTTAGATTTGACAAGCAAATCAGTAAGGGGAGAGAAATTTTGAGTTTGTTTGCTTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTGTAAGCGTCGATCGATAATGATTGATGGGATCATCGGCGCAACCAGCACCACGTTGTTAAACAGCTTTTGGACGTCAAATCGGATGCGTGCATTAATTGGGAACAGGGTCCTGTTTTGGCTTAAAATCCTCTCCGATCTCCAGCTCTGTGAAAGCTTGAATCAGTTAGTGGTCTTCCAGGTCCAAGTTTGGTTTGGCAGATTAAGTTTGTTGTTCACTCATGGAGAGCTTATTAGCTCTTACACTGGGAGAGTGGCAAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAACGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTTGAGGTTCTTGAGAAAGATGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATGCCTATCAAATGACTGCTATGGCAGACTTAATTGACTTTTATGAGTGGAAGGAGGTGATTATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAAAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCTCAGTGAAATCACAGTCATACTCAATAAATCCAAGTTGCTTGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAAACATCCTTCAAGGCGTGGTTATACTTCGTCAACATATTCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGACTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTACGATACCATTCAAGTAGTTGCACGCGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACATTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGGCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAACAGAAACGAATTAGTTATTCCCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTGGTGATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACCGCAGTCAATGGAAGCCACAATAACATTGAAGGATACTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCCAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAGAATTCAAAGTCAAATGCTTGGGTGTTCCTTACACCATTTACAACAGAGATGTGGTGCGTAACATCGGCATCCTTTTTTATGATTGGGGCTGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTTCAGCTTCTCGACATTGTTTAA 2268 41.23 MRKPIRWIWLGKNDGFEEAIIKSSREARELFNSVTGVWFDGSRGKKLCGSVILRFDKQISKGREILSLFAWFGGHCRRTARSCKRRSIMIDGIIGATSTTLLNSFWTSNRMRALIGNRVLFWLKILSDLQLCESLNQLVVFQVQVWFGRLSLLFTHGELISSYTGRVAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFEVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNLSEITVILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSINILQGVVILRQHIPESSQKTTLWSRLRKMLPEDSRNSSLNVYALSAYDTIQVVARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNIVNRGYEVINIDQTGLRRVGYWSNGTGFTIQSPETLKQKRISYSHLNQTLGNVTWPGGKTERPRGWVIADNERPLVIGVPRRVSFIEFVTAVNGSHNNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLTPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVQLLDIV 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2162543 2172050 + Lsi10G001380.1 Lsi10g00138 671695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00138 755 Gene3D - 170 517 - -
Lsi10g00138 755 PANTHER GLUTAMATE RECEPTOR 3.7 161 752 - -
Lsi10g00138 755 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 161 752 - -
Lsi10g00138 755 SUPERFAMILY Periplasmic binding protein-like I 161 581 IPR028082 -
Lsi10g00138 755 Gene3D - 267 541 - -
Lsi10g00138 755 Gene3D - 581 700 - -
Lsi10g00138 755 SMART GluR_14 590 753 IPR001320 GO:0015276|GO:0016020
Lsi10g00138 755 Pfam Receptor family ligand binding region 170 526 IPR001828 -
Lsi10g00138 755 Gene3D - 701 750 - -
Lsi10g00138 755 Pfam Ligated ion channel L-glutamate- and glycine-binding site 605 692 IPR019594 GO:0004970|GO:0016020
Lsi10g00138 755 CDD PBP1_GABAb_receptor_plant 161 543 IPR044440 -
Lsi10g00138 755 SUPERFAMILY Periplasmic binding protein-like II 564 715 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00138 Lsi-Chr10:2162543 Lsi11g01292 Lsi-Chr11:21564679 6.04E-126 dispersed
Lsi10g00138 Lsi-Chr10:2162543 Lsi10g00140 Lsi-Chr10:2214247 0 proximal
Lsi10g00138 Lsi-Chr10:2162543 Lsi11g01459 Lsi-Chr11:23172759 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00138 K05387 - csv:101215715 1125.54