Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00140 | ATGAAGATGTTTTGGATTAGAAGGAGTGGCCATTGGGTCAGAACCAGAGTGCTGTTATTTGTATTTTTCTTTGGGATGGGGATGCCTTTGGGAGTGATTGGTGTTTCTAAAAACACAAGCGTTGCTTCTTCGAACACAAGGGTGTTGAACTTAGGAGTTCTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCTGTGGACGATGTCAATGCCGATAACAGCATTCTTCCAGGAACAAAGCTGAACTTGATCCTACACGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTGGTTGCTGCTATTGGACCACAATCTTCGGGCATCGCTCACGTTATTTCCCATGTTATTAATGAACTCCATATTCCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGGTAGAGCATTTTCAATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCTAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCCCCATTAGCACCATAAGTGACTTGTTGGTTTCAATAAACCTGATGGAATCTCGAGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAGTATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCCGATGGCGATCTGAAGAAAAACTTTGTCACCAAGTGGAAGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGCGCTCTTGACACATTTTTTAAAGAAGGTGGAAATATATCCTTTTCCAACGACCCTAAGTTACATGAAAACAATGGAAGCGTGCTGCACTTAAAATCCCTCCGAGTGTTTAACGGTGGCGAACAACTTCTACAGACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCAAATTCAGTTTGGTGATGACAGAAATTTGATGCATCCAGCTTATGATATCCTGAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCCTCCTAATGCTTCCCCAAATAACCAACTCTACAGTGTCATATGGCCGGGTGAAGTAACGCACGTTCCTCGTGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATACTATATGGAGATGGAACGGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCCAGCCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATGCTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTTGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATAGCAGCATCGAGGATCATTAAACTGAAAAATCAGGAGGAATATGTCGACGCTCTTAAGCGTGGACCAGGAAATGGCGGGGTTGCTGCCATTGTTGACGAGCTTCCTTACGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATACAGGACAGTTGGACAGGAGTTCACGAAAAGCGGATGGGGATTTGTAAGTATTAATCCAACTCTTCTCCTTGGTTTCATGTTCATGGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTTTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGTCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCGTTGCCTGCTTTGTTGCTCTTTCGATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCGGAAACCCAGCCTGAAGTCGAGGAGATTGAACCTGTCAGGAAAAGACGCCTTAGTCGTACAACCAGCTTCATGCTCTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAACTTAAAAGAAAAACCAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCTTGATTCACCTACTTGA | 2856 | 42.89 | MKMFWIRRSGHWVRTRVLLFVFFFGMGMPLGVIGVSKNTSVASSNTRVLNLGVLFTLDSVIGRSAQPAILAAVDDVNADNSILPGTKLNLILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVEHFQWREVVAIFVDDDNGRSGISALSDALAKKRAKISYKAAFPPGSPISTISDLLVSINLMESRVYIVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGDLKKNFVTKWKNLKYKKSPNFNSYALYAYDSVWLAARALDTFFKEGGNISFSNDPKLHENNGSVLHLKSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLMHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKPPNASPNNQLYSVIWPGEVTHVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGTDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAICFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYVDALKRGPGNGGVAAIVDELPYVELFLAGTNCIYRTVGQEFTKSGWGFVSINPTLLLGFMFMAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGVACFVALSIFFFRVLFQYRRFTPETQPEVEEIEPVRKRRLSRTTSFMLFVDKKEAEIKGKLKRKTSDNKQASQSSEGHLDSPT | 951 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2214247 | 2219761 | + | Lsi10G001400.1 | Lsi10g00140 | 671697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00140 | 951 | MobiDBLite | consensus disorder prediction | 928 | 951 | - | - | |
Lsi10g00140 | 951 | Gene3D | - | 593 | 725 | - | - | |
Lsi10g00140 | 951 | Gene3D | - | 68 | 412 | - | - | |
Lsi10g00140 | 951 | SUPERFAMILY | Periplasmic binding protein-like II | 459 | 839 | - | - | |
Lsi10g00140 | 951 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 62 | 78 | - | - | |
Lsi10g00140 | 951 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 253 | 276 | - | - | |
Lsi10g00140 | 951 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 122 | 150 | - | - | |
Lsi10g00140 | 951 | Pfam | Receptor family ligand binding region | 66 | 421 | IPR001828 | - | |
Lsi10g00140 | 951 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 34 | 932 | - | - | |
Lsi10g00140 | 951 | Gene3D | - | 477 | 592 | - | - | |
Lsi10g00140 | 951 | Gene3D | - | 164 | 437 | - | - | |
Lsi10g00140 | 951 | SUPERFAMILY | Periplasmic binding protein-like I | 43 | 475 | IPR028082 | - | |
Lsi10g00140 | 951 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 492 | 839 | IPR001638 | - | |
Lsi10g00140 | 951 | SMART | GluR_14 | 484 | 840 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi10g00140 | 951 | CDD | GluR_Plant | 481 | 838 | - | - | |
Lsi10g00140 | 951 | PANTHER | GLUTAMATE RECEPTOR 3.4 | 34 | 932 | - | - | |
Lsi10g00140 | 951 | PIRSF | IGluLR_plant | 12 | 950 | IPR017103 | - | |
Lsi10g00140 | 951 | Pfam | Ligand-gated ion channel | 840 | 871 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi10g00140 | 951 | CDD | PBP1_GABAb_receptor_plant | 50 | 438 | IPR044440 | - | |
Lsi10g00140 | 951 | Gene3D | - | 792 | 845 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01823 | Lsi-Chr4:25408210 | Lsi10g00140 | Lsi-Chr10:2214247 | 2.95E-51 | dispersed | |
Lsi04g01826 | Lsi-Chr4:25427138 | Lsi10g00140 | Lsi-Chr10:2214247 | 0 | dispersed | |
Lsi08g01273 | Lsi-Chr8:21135873 | Lsi10g00140 | Lsi-Chr10:2214247 | 2.47E-136 | dispersed | |
Lsi10g00140 | Lsi-Chr10:2214247 | Lsi11g01459 | Lsi-Chr11:23172759 | 0 | dispersed | |
Lsi10g00138 | Lsi-Chr10:2162543 | Lsi10g00140 | Lsi-Chr10:2214247 | 0 | proximal | |
Lsi10g00139 | Lsi-Chr10:2172169 | Lsi10g00140 | Lsi-Chr10:2214247 | 5.24E-61 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00140 | K05387 | - | csv:101215485 | 1694.48 |