Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00140 ATGAAGATGTTTTGGATTAGAAGGAGTGGCCATTGGGTCAGAACCAGAGTGCTGTTATTTGTATTTTTCTTTGGGATGGGGATGCCTTTGGGAGTGATTGGTGTTTCTAAAAACACAAGCGTTGCTTCTTCGAACACAAGGGTGTTGAACTTAGGAGTTCTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCTGTGGACGATGTCAATGCCGATAACAGCATTCTTCCAGGAACAAAGCTGAACTTGATCCTACACGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTGGTTGCTGCTATTGGACCACAATCTTCGGGCATCGCTCACGTTATTTCCCATGTTATTAATGAACTCCATATTCCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGGTAGAGCATTTTCAATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCTAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCCCCATTAGCACCATAAGTGACTTGTTGGTTTCAATAAACCTGATGGAATCTCGAGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAGTATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCCGATGGCGATCTGAAGAAAAACTTTGTCACCAAGTGGAAGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGCGCTCTTGACACATTTTTTAAAGAAGGTGGAAATATATCCTTTTCCAACGACCCTAAGTTACATGAAAACAATGGAAGCGTGCTGCACTTAAAATCCCTCCGAGTGTTTAACGGTGGCGAACAACTTCTACAGACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCAAATTCAGTTTGGTGATGACAGAAATTTGATGCATCCAGCTTATGATATCCTGAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCCTCCTAATGCTTCCCCAAATAACCAACTCTACAGTGTCATATGGCCGGGTGAAGTAACGCACGTTCCTCGTGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATACTATATGGAGATGGAACGGACACTCCTGAGTACAGCAATCTTGTATATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCCAGCCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATGCTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTTGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATAGCAGCATCGAGGATCATTAAACTGAAAAATCAGGAGGAATATGTCGACGCTCTTAAGCGTGGACCAGGAAATGGCGGGGTTGCTGCCATTGTTGACGAGCTTCCTTACGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATACAGGACAGTTGGACAGGAGTTCACGAAAAGCGGATGGGGATTTGTAAGTATTAATCCAACTCTTCTCCTTGGTTTCATGTTCATGGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTTTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGTCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCGTTGCCTGCTTTGTTGCTCTTTCGATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCGGAAACCCAGCCTGAAGTCGAGGAGATTGAACCTGTCAGGAAAAGACGCCTTAGTCGTACAACCAGCTTCATGCTCTTTGTAGATAAAAAAGAAGCAGAAATCAAAGGCAAACTTAAAAGAAAAACCAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCTTGATTCACCTACTTGA 2856 42.89 MKMFWIRRSGHWVRTRVLLFVFFFGMGMPLGVIGVSKNTSVASSNTRVLNLGVLFTLDSVIGRSAQPAILAAVDDVNADNSILPGTKLNLILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVEHFQWREVVAIFVDDDNGRSGISALSDALAKKRAKISYKAAFPPGSPISTISDLLVSINLMESRVYIVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGDLKKNFVTKWKNLKYKKSPNFNSYALYAYDSVWLAARALDTFFKEGGNISFSNDPKLHENNGSVLHLKSLRVFNGGEQLLQTIKRTNFTGVSGQIQFGDDRNLMHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKPPNASPNNQLYSVIWPGEVTHVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGTDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAICFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYVDALKRGPGNGGVAAIVDELPYVELFLAGTNCIYRTVGQEFTKSGWGFVSINPTLLLGFMFMAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGVACFVALSIFFFRVLFQYRRFTPETQPEVEEIEPVRKRRLSRTTSFMLFVDKKEAEIKGKLKRKTSDNKQASQSSEGHLDSPT 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2214247 2219761 + Lsi10G001400.1 Lsi10g00140 671697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00140 951 MobiDBLite consensus disorder prediction 928 951 - -
Lsi10g00140 951 Gene3D - 593 725 - -
Lsi10g00140 951 Gene3D - 68 412 - -
Lsi10g00140 951 SUPERFAMILY Periplasmic binding protein-like II 459 839 - -
Lsi10g00140 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Lsi10g00140 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 253 276 - -
Lsi10g00140 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Lsi10g00140 951 Pfam Receptor family ligand binding region 66 421 IPR001828 -
Lsi10g00140 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 932 - -
Lsi10g00140 951 Gene3D - 477 592 - -
Lsi10g00140 951 Gene3D - 164 437 - -
Lsi10g00140 951 SUPERFAMILY Periplasmic binding protein-like I 43 475 IPR028082 -
Lsi10g00140 951 Pfam Bacterial extracellular solute-binding proteins, family 3 492 839 IPR001638 -
Lsi10g00140 951 SMART GluR_14 484 840 IPR001320 GO:0015276|GO:0016020
Lsi10g00140 951 CDD GluR_Plant 481 838 - -
Lsi10g00140 951 PANTHER GLUTAMATE RECEPTOR 3.4 34 932 - -
Lsi10g00140 951 PIRSF IGluLR_plant 12 950 IPR017103 -
Lsi10g00140 951 Pfam Ligand-gated ion channel 840 871 IPR001320 GO:0015276|GO:0016020
Lsi10g00140 951 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Lsi10g00140 951 Gene3D - 792 845 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01823 Lsi-Chr4:25408210 Lsi10g00140 Lsi-Chr10:2214247 2.95E-51 dispersed
Lsi04g01826 Lsi-Chr4:25427138 Lsi10g00140 Lsi-Chr10:2214247 0 dispersed
Lsi08g01273 Lsi-Chr8:21135873 Lsi10g00140 Lsi-Chr10:2214247 2.47E-136 dispersed
Lsi10g00140 Lsi-Chr10:2214247 Lsi11g01459 Lsi-Chr11:23172759 0 dispersed
Lsi10g00138 Lsi-Chr10:2162543 Lsi10g00140 Lsi-Chr10:2214247 0 proximal
Lsi10g00139 Lsi-Chr10:2172169 Lsi10g00140 Lsi-Chr10:2214247 5.24E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00140 K05387 - csv:101215485 1694.48