Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00143 ATGCCTGCCGGAATTATGACACCGGCCAGAAACATGGCGTCGATGATTGGAAGAAATGGGAATAATGTTGCTGGATTTGCCTCCCCTTCTGGATTTCCTCTTTCTCAGGCTAATATGTCATTTCAACCCCAATCCTCATCCATTTTCCAAAAACGCCCAAGCATAATGGACAGTCATCTCCTCCCCTTAGACCTCCCTCAAAACACTTCCGAAAGCGATCTTGCCCGAATCCGAGACGATGACTTCGACAGCGCCACTAAATCCGGCAGCGACAACAACCACGACCTCGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTACCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCTGATGACAAACAAAGGAAAGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACATGAGCGACATGAGAATACTCAACTTCGAACAGAAAATGAGAAGCTAAGAGCTGATAATATGAGATATAGAGAAGCCCTAAGCAATGCCTCGTGCCCTAATTGCGGTGGCCCAACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCTCAGAATAATGTTAGCAAATTTTCCCTTTCATTAACCAACCCCACTTTAGAGAAAATGATTGATATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTTGTGAACTACCCTCTACTTTCTCCACCAGTTCCATCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACAAGGCCTCGGAGGAGGAGACATCTACGGCTCGGCCAGTGACCTGATCCGATCCATCAGCGCCCCAACTGAGGCTGATAAGCCGATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTAACTAGAATGGCTCAAATGGGGGAGCCATTGTGGATGACTAGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACATTTCCTAGAGGCATTGGTCCCAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGACGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACTGGAGTTGCTGGAAATTACAATGGAGCATTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCACCACTAGTTCCGACCCGGGAAAGCTACTTTGTTAGATATTGTAAACAGCATGGGGACGGGACATGGGCGGTGGTGGATGTCTCATTGGATGATCTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCGGGTTGTTTGATCCAAGAAATGGCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAACAACTAGTAAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACTAATATTCCAACTGGTGATGTTGGAGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACTACTCTGTCGGGTACGAGTGCGGATGACGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTTAGTGCTGCAACTTCCTTCTGGCTCCCTGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGAAGCACAGATACAAATACGAGACATGCTTCTTAACTATATCTGATCAAACTTTTGGATTATTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATCGCAAACGGCCGCGACACTGGAAACTCTGCACGGACCCAACAGCCTCATTTGTGATCTACGCTCCAGTCGACATAGTAGCAATGAACGTCGTCCTGAATGGGGGCGATCCCGACTACGTGGCACTTCTCCCCTCAGGGTTTGCCATTCTCCCGGACGGCGGTGGCGGAGAGGGCATTTCAGGTGGGTCGTTGCTGACGGTTGCATTTCAAATATTGGTGGATTCAGTGCCAACGGCAAAACTGTCACTTGGGTCAGTTGCAACGGTAAACAATCTAATAGCTTGTACGGTTGAGAGGATAAAAGCGTCATTATCATGTGAGACTGCATAA 2319 47.22 MPAGIMTPARNMASMIGRNGNNVAGFASPSGFPLSQANMSFQPQSSSIFQKRPSIMDSHLLPLDLPQNTSESDLARIRDDDFDSATKSGSDNNHDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENAQNNVSKFSLSLTNPTLEKMIDIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQQGLGGGDIYGSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMANGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGAERMVISFCAGVSASTTHTWTTLSGTSADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEKHRYKYETCFLTISDQTFGLLGHSFQRRSSSRNGSHRKRPRHWKLCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGISGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETA 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2279076 2285010 - Lsi10G001430.1 Lsi10g00143 671700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00143 772 SUPERFAMILY Bet v1-like 554 764 - -
Lsi10g00143 772 SMART START_1 315 535 IPR002913 GO:0008289
Lsi10g00143 772 Pfam START domain 316 535 IPR002913 GO:0008289
Lsi10g00143 772 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Lsi10g00143 772 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Lsi10g00143 772 Gene3D - 96 182 - -
Lsi10g00143 772 Gene3D - 365 534 IPR023393 -
Lsi10g00143 772 SMART HOX_1 106 169 IPR001356 GO:0003677
Lsi10g00143 772 Coils Coil 159 191 - -
Lsi10g00143 772 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 769 IPR042160 -
Lsi10g00143 772 CDD START_ArGLABRA2_like 310 534 - -
Lsi10g00143 772 Pfam Homeodomain 108 164 IPR001356 GO:0003677
Lsi10g00143 772 ProSiteProfiles START domain profile. 306 538 IPR002913 GO:0008289
Lsi10g00143 772 MobiDBLite consensus disorder prediction 81 116 - -
Lsi10g00143 772 MobiDBLite consensus disorder prediction 81 107 - -
Lsi10g00143 772 CDD homeodomain 108 166 IPR001356 GO:0003677
Lsi10g00143 772 SUPERFAMILY Homeodomain-like 95 165 IPR009057 -
Lsi10g00143 772 SUPERFAMILY Bet v1-like 306 537 - -
Lsi10g00143 772 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 769 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00412 Lsi-Chr1:3515519 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi02g00624 Lsi-Chr2:5553402 Lsi10g00143 Lsi-Chr10:2279076 1.41E-97 dispersed
Lsi05g01248 Lsi-Chr5:20287533 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi05g02010 Lsi-Chr5:27152991 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi09g01939 Lsi-Chr9:28175003 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi01g00411 Lsi-Chr1:3510514 Lsi10g00143 Lsi-Chr10:2279076 2.05E-34 wgd
Lsi10g00143 Lsi-Chr10:2279076 Lsi11g01463 Lsi-Chr11:23201740 2.07E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26001 PF01852 START 9.20E-60 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00143 K09338 - csv:101214763 1278.46