Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00150 ATGAGAATGGGGAGGCTTACTTCTTTGGCGTTGGCCACTATAGTTGGTCTTCTATGCCTGATAGGCTCCACTCAAGCTCAGTTGCAGCTGGGTTTCTATGCCAAAAGCTGCCCAAACGCTGAGAAGATTGTGCTAGATTTCGTTCACCAGCATATCCACAATGCCCCTTCACTGGCAGCAACTTTCATTAGAATGCACTTCCATGATTGCTTTGTCAGGGGTTGTGATGGATCTGTGCTTATAAACTCCACCTCAAATAACCAAGCTGAGAAGGATTCTCAGCCAAATCAAACACTCAGAGGCTTTGACTTCATTGATAGAGTCAAAAGCTTACTTGAAGCTGAATGCCCTGGAGTGGTCTCTTGCGCAGATGTTCTTTCCTTGGTTGCAAGAGATACCATTGTAGCCACAGGAGGTCCATACTGGGAAGTTCCAACTGGCCGTAGGGATGGAGTGATCTCAATATCATCAGAAGCCTTGAATAACATTCCTCCTCCATTTGGAAACCTTTCCACACTCCAAAGACTTTTCGCAAACCAAGGCCTTGATCTAAAAGACTTGGTGTTGCTATCTGGCGCTCACACAATCGGTATAGCACATTGCTCATCATTCAGAAACCGACTCTACAATTTCACCGGCGTCGGAGACCAAGATCCCTCTCTAGACCCAAGATACGCCGCTAATCTGAAGGCCAACAAATGCAAAACTCCGACGGCCAACAGCAAAGTTGAAATGGACCCTGGAAGTCGCAACACTTTTGACCTTAGCTACTATTCTCTTCTACTAAAAAGGAGGGGGCTCTTCGAATCCGATGCTGCTCTCACTACAGACGCAACTACATTGGGTTTCGTTCAGAAACTCGTACAAGGACCCATTGAAGAATTCTTCGCTGAATTTGCAGCGTCCATGGAGAAAATGGGTCGGATTAAAGTGAAGACTGGAACTGAAGGTGAAATCAGACGGAGATGCGCTGTGGTGAACAGTTGA 987 46.4 MRMGRLTSLALATIVGLLCLIGSTQAQLQLGFYAKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNQAEKDSQPNQTLRGFDFIDRVKSLLEAECPGVVSCADVLSLVARDTIVATGGPYWEVPTGRRDGVISISSEALNNIPPPFGNLSTLQRLFANQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPSLDPRYAANLKANKCKTPTANSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALTTDATTLGFVQKLVQGPIEEFFAEFAASMEKMGRIKVKTGTEGEIRRRCAVVNS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2437499 2439118 + Lsi10G001500.1 Lsi10g00150 671707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00150 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lsi10g00150 328 Gene3D Peroxidase, domain 2 164 306 - -
Lsi10g00150 328 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Lsi10g00150 328 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Lsi10g00150 328 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 Pfam Peroxidase 46 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 PANTHER PEROXIDASE 25-RELATED 14 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00150 328 Gene3D - 31 327 - -
Lsi10g00150 328 PANTHER PEROXIDASE 14 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01301 Lsi-Chr8:21380032 Lsi10g00150 Lsi-Chr10:2437499 1.17E-87 dispersed
Lsi09g01386 Lsi-Chr9:21880522 Lsi10g00150 Lsi-Chr10:2437499 4.79E-106 dispersed
Lsi10g00150 Lsi-Chr10:2437499 Lsi11g01470 Lsi-Chr11:23267623 1.60E-150 dispersed
Lsi03g00800 Lsi-Chr3:11811148 Lsi10g00150 Lsi-Chr10:2437499 2.33E-77 transposed
Lsi05g01275 Lsi-Chr5:20482664 Lsi10g00150 Lsi-Chr10:2437499 8.84E-97 transposed
Lsi10g00150 Lsi-Chr10:2437499 Lsi11g01469 Lsi-Chr11:23252468 7.02E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00150 K00430 - csv:101213629 604.364