Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00160 ATGGACTACTCTCCATCAAACTGGAATTGGCTCTTTGATTACTCTACAATGGATGATCTCGCCGTCGTCGACCCCCGTTTCTCGCCGCCTCAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCCCAAAGGAAGTGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGACAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGACTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCAAAGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGCTGTGAATACTCGAGTAGCTGACATCCAGCATCCTCCCCCTGCACTGTCAGCTGCATTTACAGCACAAGGGCAAGCGGCTGGTAACAAGTTGATGCCTTTCATAGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTTGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTAA 717 47.28 MDYSPSNWNWLFDYSTMDDLAVVDPRFSPPQSISFSWSNPSINFSSKDSLEVDCSYEDLDSPKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKTDKVAILSDAIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNTRVADIQHPPPALSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2566969 2570395 - Lsi10G001600.1 Lsi10g00160 671717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00160 238 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 4 238 - -
Lsi10g00160 238 PANTHER BHLH TRANSCRIPTION FACTOR 4 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lsi10g00160 238 SMART finulus 82 133 IPR011598 GO:0046983
Lsi10g00160 238 Pfam Helix-loop-helix DNA-binding domain 79 128 IPR011598 GO:0046983
Lsi10g00160 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983
Lsi10g00160 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Lsi10g00160 238 MobiDBLite consensus disorder prediction 67 88 - -
Lsi10g00160 238 CDD bHLH_AtILR3_like 81 156 - -
Lsi10g00160 238 Gene3D - 68 125 IPR036638 GO:0046983
Lsi10g00160 238 Coils Coil 124 179 - -
Lsi10g00160 238 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 181 - -
Lsi10g00160 238 SUPERFAMILY Mitotic arrest deficient-like 1, Mad1 133 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00656 Lsi-Chr2:5857614 Lsi10g00160 Lsi-Chr10:2566969 7.68E-65 dispersed
Lsi05g00629 Lsi-Chr5:7768870 Lsi10g00160 Lsi-Chr10:2566969 3.01E-08 dispersed
Lsi05g00630 Lsi-Chr5:7771313 Lsi10g00160 Lsi-Chr10:2566969 3.57E-80 dispersed
Lsi05g01719 Lsi-Chr5:24648201 Lsi10g00160 Lsi-Chr10:2566969 5.27E-46 dispersed
Lsi10g00160 Lsi-Chr10:2566969 Lsi10g00463 Lsi-Chr10:6712227 2.71E-15 dispersed
Lsi10g00160 Lsi-Chr10:2566969 Lsi04g01245 Lsi-Chr4:19399132 1.06E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26005 PF00010 HLH 3.10E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00160 - - csv:101212433 456.832