Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00161 ATGGTGATTCAGAGAGAAATGGAATTGAGAAGAGCTGGTTATGTGGTTGTTTTTGTGACTCTCCTTTGTGCATTGGCAATTGCGAGTTCAGAGGGCAGAAGGAAGACGGTCGAAATGGTTCTTGCCAATGCCGCCGGTTGTCATTTCACATCCTCACAGTTGGATACAGATAAGGGCGAGAAGGCATGCATGAAAGAATTAGCAGATAAGGAATATGAAGCAGAAGAATTCGTTCCTTGCATCCAAAAAGAAAAGATAGGTAAAGAAGATATAAGAACTCTTCCAACTGACATGAAACATGACTTGTTGGATTGTTTAAGAAAGAAAACTATGATTTCTCGTGGTTCTGAACCAAGTTCTAGCTTATTTGATCGGTTTAGCAAATCAATTGAGTTGTTCTTCGGTGGAGGGTCCAATAATCACATGAGACATCTAATTAGAGCATCGGAAGATTCATCAGAACCACACCCAGCTGAAGCTCCAGCTCCATCTCCATCTCCATCTCCATCTCCATCTCCTGAAGCAGAATCACCAGCAGATTCTCCATTTCCGTCTCCCAGTCATGCTCCAATGCCATCGCCAAGTTATGCCCCAACCAAGTCTCCATCACGAAATCTTCATCCACCTGTTGAGGCTCCAGCGGCGTCTCCAGAACCAGTACCGGACGACGCCGATGTTTCGGATTTGCCTACACCTTCTGTAGTTCGCTCACCACCTCCTCCACCTCCACGTGCTTCTTCCAAGTCTCGCCCTCCAAAGAAGCATGAAGAAGACCAGACGGCCATAATTGCTGGTATTGTAGCAGCTAGTGTGGTAGTTGTTCTTGTGGTTGCTCTGCTTTTGTTCTGTTGTCGTAGAGGTGAGAAAAGTAAGGTTGATCCGAAGGATGGGCAAAAGGATGAGAGGCCTCTCCTAAACATATCTTTGAGTGAATTATCAGCAGGTTCTTCACAGAAGTCATACACCGTTGGAAATTCAGCTACCAAAGAGGTAAATGCTGATAATGGAACTAAACCATCCTCATTTGTTGGCAACTTATCAGTGAATCCTGAACATGCTACCTCCATGGCTGAGGCTCCAACATCTGATGGTAAATCATCAGCAATGCCACCTCTAAAACCCCCTCCTGGAAGATCAGATTCCCAACCTCCTCCTCCACCTCCATCAGAACCAGAACAAGAACCAGCGCCAGCGGCAGCACCTCCACCGCCTCCGCCACCTGCTCCTAGAGCCCCACCACCACCACCCCTGAAAGTTGGCCGACCCCCACCTGCACCACCGACGGCAATCCCTGGTAAATCTCAAGCAGCGGCTGTGGGGCCACATCGGCGTGGACCTAGTGGCTCAAGTATGGATGGGGATTCAGGAGGCCAAAAGACCAAGTTAAAGCCCTTTTTCTGGGATAAGGTTCTTGCTAACCCTGGGCAATCCATGGTCTGGCATGAGATTAGTGCTGGATCATTCCAATTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATACAGCAGTAGAAACTAACAGAGGCGACCGCAAGAAAGATTCAGTTTCAGACCCTTCACTACAGTACATTCAAATCATCGATGCTAAGAAAGCTCAAAACCTTTCAATTCTCCTACGAGCATTGAATGTGACAACAGCAGAAGTTTTGGATGCCCTTGAAGAAGGAAACCCTGATCTTCCAGCAGAGCTTCTGCAAACCTTGCTGAAGATGGCACCAACAACAGAAGAGGAACTGAAACTGAGATTATTTTCAGGGGATCTTTCTCAGCTAGGTCCAGCAGAACGATTCCTCAAAGTGTTGGTGGACGTCCCTTTTGCTTTTAAACGATTAGAGTGTCTTCTCTTCATGCTCTCAATGTCGGAAGACGTCACTAACATTAAGGAGTCATTCGCTACTCTAGAGGTCGCCTGCAACAATCTTAGAAATAGCAGGCTGTTTCTCAAGCTATTAGAAGCAGTTCTCAAAACCGGCAATCGAATGAACGACGGGACGTACCGTGGTGGTGCTCAGGCGTTCAAGCTCGATACGCTCTTGAAACTGGCGGATGTTAAAGGAACCGATGGCAAGACTTCGCTCTTACACTTTGTCGTACAGGAGATTATTCGTTCGGAAGGCATCCGAGCAGCCCGCTCTGATAGACAAAGCCGAAGTTCGTCCAGCATAACCTCCAGCAGCGATACGACTTCCGAGGACTTCGCCGACGATTCGACGGAACATTATCGACAATTAGGTCTTCAGGTGGTGTCTAGTTTAAGCACAGAGCTCCAGGACGTCAAAAGAGCGGCTGCCATAGATACGGAGGGGCTAACGACGACGATATCAAAACTTGGCCAATCTCTACTTAAAACCAAAGCATTTATAAACGCCGAGATGACGAGTTTAGACGAAGACAGCAAATTCCACCAATCGTTGTCGAAATTTTTGGAAGGAGCCGAAGCGGACATTTCGTGGATTGCAGTGGAAGAAAAGAAGATAATGGCATTGGTGAAGAGCACGGTGGATTACTTCCATGGAAATTCTGGAAAGGAGGAAGGATTGAGATTGTTTACAATCGTACGCGACTTCTTGATTGTGTTGGGCAAGACTTGTAGACAGGTGAAAGAAGCGGCTGAGGCTGCGGCCAAGCAAGCGAAGAATGCCAAAAAAGAAACTGCGACAACGTCGGCTACTTGTCAGCAGAATTCAGATATACGGCAGCGGCTATTCCCGGCGATTGTAGAACGACGGATAGGCGAGGACTCAAGTTCTTCGGACGACGAAGATGGCGAGAGTTCATCATCTTCATCATCCTAG 2796 47.35 MVIQREMELRRAGYVVVFVTLLCALAIASSEGRRKTVEMVLANAAGCHFTSSQLDTDKGEKACMKELADKEYEAEEFVPCIQKEKIGKEDIRTLPTDMKHDLLDCLRKKTMISRGSEPSSSLFDRFSKSIELFFGGGSNNHMRHLIRASEDSSEPHPAEAPAPSPSPSPSPSPEAESPADSPFPSPSHAPMPSPSYAPTKSPSRNLHPPVEAPAASPEPVPDDADVSDLPTPSVVRSPPPPPPRASSKSRPPKKHEEDQTAIIAGIVAASVVVVLVVALLLFCCRRGEKSKVDPKDGQKDERPLLNISLSELSAGSSQKSYTVGNSATKEVNADNGTKPSSFVGNLSVNPEHATSMAEAPTSDGKSSAMPPLKPPPGRSDSQPPPPPPSEPEQEPAPAAAPPPPPPPAPRAPPPPPLKVGRPPPAPPTAIPGKSQAAAVGPHRRGPSGSSMDGDSGGQKTKLKPFFWDKVLANPGQSMVWHEISAGSFQFNEEMMESLFGYTAVETNRGDRKKDSVSDPSLQYIQIIDAKKAQNLSILLRALNVTTAEVLDALEEGNPDLPAELLQTLLKMAPTTEEELKLRLFSGDLSQLGPAERFLKVLVDVPFAFKRLECLLFMLSMSEDVTNIKESFATLEVACNNLRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTSLLHFVVQEIIRSEGIRAARSDRQSRSSSSITSSSDTTSEDFADDSTEHYRQLGLQVVSSLSTELQDVKRAAAIDTEGLTTTISKLGQSLLKTKAFINAEMTSLDEDSKFHQSLSKFLEGAEADISWIAVEEKKIMALVKSTVDYFHGNSGKEEGLRLFTIVRDFLIVLGKTCRQVKEAAEAAAKQAKNAKKETATTSATCQQNSDIRQRLFPAIVERRIGEDSSSSDDEDGESSSSSSS 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2592284 2596349 + Lsi10G001610.1 Lsi10g00161 671718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00161 931 PANTHER FORMIN-LIKE PROTEIN 3 7 920 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 881 900 - -
Lsi10g00161 931 Coils Coil 864 888 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 309 362 - -
Lsi10g00161 931 PANTHER FORMIN-RELATED 7 920 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi10g00161 931 SMART it6_source 452 875 IPR015425 -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 288 460 - -
Lsi10g00161 931 Pfam Formin Homology 2 Domain 458 858 IPR015425 -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 288 302 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 369 430 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 878 931 - -
Lsi10g00161 931 Gene3D Formin, FH2 domain 461 900 IPR042201 -
Lsi10g00161 931 SUPERFAMILY Formin homology 2 domain (FH2 domain) 465 878 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 712 734 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 148 257 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 713 731 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 158 197 - -
Lsi10g00161 931 MobiDBLite consensus disorder prediction 233 247 - -
Lsi10g00161 931 ProSiteProfiles Formin homology-2 (FH2) domain profile. 452 886 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00161 Lsi-Chr10:2592284 Lsi11g00020 Lsi-Chr11:225806 2.37E-116 dispersed
Lsi10g00161 Lsi-Chr10:2592284 Lsi10g00514 Lsi-Chr10:7336609 3.06E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00161 - - cmos:111449007 962.214