Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00167 ATGCATCCCGATGATCAGCAGCAACAGCCATTGATAGAGGAGGAAGATGAGGAAACTGCCTACGACTTGACGGAGAAGGTTGTGGTAATTGGGATCGACGAAGCGGAATCTGATTCGGACGTGGGTTTGCTGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACAGGGCCTGGGTTTTTGATGAGCATAGCTTTTCTAGATCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGATATTCTTTGTTGTGGCTTCTGTTGTGGGCTACGGCCATGGGGCTTTTGATCCAGTTGCTTTCGGCTAGGCTTGGCGTTGCCACTGGAAGGCACTTGGCCGAGCTGTGTCGAGAAGAGTATCCAACTTGGGCGAGGATTGTGCTGTGGGTCATGGCGGAGTTCGCCCTCATCGGGGCTGATATACAGGAAGTCATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGGGCTTTGCCTCTCTGGGCTGGAGTTATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAACTGGAGGCTGTTTTTGCTGTTCTTATTGCTACAATGGCACTTTCATTTGCTTGGATGTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGGTGTATCATTATGCCTCATAATGTGTTTTTGCACTCTGCTCTTGTGCAGTCGCGAGATGTCGATCCGAGTAAGAAAGGGCGGGTCCAAGAAGCTCTGAGATACTACTCCATTGAGTCCACTCTTGCCCTTTTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCGAGTAGCATTGGTCTTGTAAATGCAGGCCAATATCTTCAAGATAAATATGGTGGAGGGATTTTCCCCATTCTGTACATCTGGGCTATTGGTTTATTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGAGTGGATTCCTGAACTTGAAATTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCAATCGTGCCAACTATGATTGTCGCTCTCGTGTTCGAAACTTCTGACTCAATGGTCGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATTCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCGAAGGAACATCTAATGGGTAGTTTCAAAATTGGCCCCGTTTTAAAGACGATCTCTTGGCTGGTGGCAGTCTTGGTGATGGCCATCAACGGGTATCTTTTGGTGAGCTTCTTCTCATCGGAAGTGAACGGCGTGCTCATTGCCATTTTCGTATTTGTCTTCATTGCTGCATATCTTGCCTTTGTTGTTTACCTCGTCTATCGAAGCATTTCGTTTTCAAGTTGGCACAACTTCATTAACCGCAAGACTTACACGGCCAGTGGAAACTGA 1533 45.66 MHPDDQQQQPLIEEEDEETAYDLTEKVVVIGIDEAESDSDVGLLPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVQEALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGIFPILYIWAIGLLAAGQSSTITGTYAGQFIMSGFLNLKLKKWLRALITRSFAIVPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFKIGPVLKTISWLVAVLVMAINGYLLVSFFSSEVNGVLIAIFVFVFIAAYLAFVVYLVYRSISFSSWHNFINRKTYTASGN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2689200 2692617 - Lsi10G001670.1 Lsi10g00167 671724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi10g00167 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00455 Lsi-Chr8:12185700 Lsi10g00167 Lsi-Chr10:2689200 8.48E-84 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00167 K21398 - csv:101211711 974.156