Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00168 ATGGATGAAATTTTTGTTTACATGTTCCTGTTTCTGATCTCTCTCCCTTTAGCCCTCAAACTTTTGCTAAGCCGTGGCAAAAACCTTCCACCAAGCCCATTTTTTCCCCTTCCATTAATAGGCCATCTCCATCTCCTCAAACATCCTATCCACCGGAATCTTCACGATCTCTCAAAAAAGTATGGCCATGTCTTTTCTCTCTGGTTTGGTTCCCGTCTTGTTGTAGTCGTATCATCTCCTTCGGCGATTCGCGAATGCTTCACAAAAAACGACATCGTTCTCGCAAATCGACCATTTTTGGGCACTGGAAAGCACTTGACGTATAACTTTACGTTACTAGCCGTCGCCCCTTATGGAGAGCTTTGGCGTAACCTTCGCCGCATTAGTACTTGTGAGATTTTCTCGACAAGTCGACTCAATTTGTTCTCGGGTATTCGACAAGATGAAGTGAAGCGATTGTTGTGTAAATTGTGTAGTGGCAATTCGGTTGAAGAATCATTATTGTTTGCAGTTGTGGAAGTTGAGCCAATGTTGTTGGATTTTACTTCTAATATTGTGATGAGGATGGTTGCTGGAAAGAGGTATTTTGGAGATGATGTAGTGTTGGATGAAGGACAAGCAGGGAAATTTAGAGATGTTGTGAAACGAGTAATGTTGTATGCTGGAGCAACTAATCCAGGAGATTTTATACCTTTATGGAATTGGATTGATCCAACTGGTCTTGAGAAGAAGATAATGAAGGTTGGGGAGGAAGCTGATGCAATTTTTCAGGGTTTAATTGATGAGATTAGGAACCAACAAGAAGGTGGGAATACGATGGTTATACTTTTAGCAGGAATCGATACAACAGCCGTGACATTAGAATGGGCACTCTCACACTTGCTCAATAATCCAGAGGTGATAAAGAAAGCAAGACTTGAGATAGAGAATTGTACTGGACAAAACCGTCTAGTAAACGAAGATGATTTGTCAAGTTTGAGTTATTTGCAAGGAATAATCTTAGAAACTTTACGGCTAACCCCAGCAGCCCCTCTGCTTGTGCCACATTGCGCATCCGAAGATTGCCAAATAGAAGGCTACGATATACCACGTGACACAATCATATTTGTCAATGCTTGGGCAATACATAGAGATCCAATTCTATGGGAAGATGTCACTAGTTTTAAGCCTGAAAGGCATGAAAATGCAATAGAATCATCTGATTCATACAAATTATTACCATTTGGGTTGGGGAGGAGGGCATGCCCTGGAGTAGGAATGGCTCAACGTGTGGTTGGATTGACATTGGCATCATTGATTCAATGCTTTGATTGGGAAAGAATGGATAGCTCATTAGTTGACATGACTGAAGGCCAAGGGATCACTATGCCAAAAGCTCAACCGTTGGTGGCCAAATGTAAACCACGCCCTATCATGAGAGCTCTTGTTAGTGAAGTTAATTCACCCCATTTAAAGTAA 1458 41.63 MDEIFVYMFLFLISLPLALKLLLSRGKNLPPSPFFPLPLIGHLHLLKHPIHRNLHDLSKKYGHVFSLWFGSRLVVVVSSPSAIRECFTKNDIVLANRPFLGTGKHLTYNFTLLAVAPYGELWRNLRRISTCEIFSTSRLNLFSGIRQDEVKRLLCKLCSGNSVEESLLFAVVEVEPMLLDFTSNIVMRMVAGKRYFGDDVVLDEGQAGKFRDVVKRVMLYAGATNPGDFIPLWNWIDPTGLEKKIMKVGEEADAIFQGLIDEIRNQQEGGNTMVILLAGIDTTAVTLEWALSHLLNNPEVIKKARLEIENCTGQNRLVNEDDLSSLSYLQGIILETLRLTPAAPLLVPHCASEDCQIEGYDIPRDTIIFVNAWAIHRDPILWEDVTSFKPERHENAIESSDSYKLLPFGLGRRACPGVGMAQRVVGLTLASLIQCFDWERMDSSLVDMTEGQGITMPKAQPLVAKCKPRPIMRALVSEVNSPHLK 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2711002 2714007 - Lsi10G001680.1 Lsi10g00168 671725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00168 485 SUPERFAMILY Cytochrome P450 30 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 408 417 IPR017972 GO:0005506|GO:0016705
Lsi10g00168 485 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 270 474 - -
Lsi10g00168 485 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 272 - -
Lsi10g00168 485 Pfam Cytochrome P450 31 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 Pfam Cytochrome P450 271 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 270 474 - -
Lsi10g00168 485 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 272 - -
Lsi10g00168 485 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS P450 superfamily signature 406 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 Gene3D Cytochrome P450 272 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 Gene3D Cytochrome P450 21 271 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 415 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 405 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00168 485 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00165 Lsi-Chr10:2651634 Lsi10g00168 Lsi-Chr10:2711002 0 dispersed
Lsi10g00166 Lsi-Chr10:2674057 Lsi10g00168 Lsi-Chr10:2711002 1.23E-161 dispersed
Lsi10g00168 Lsi-Chr10:2711002 Lsi10g00169 Lsi-Chr10:2729368 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00168 K13260 - csv:105434396 800.816