Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00169 ATGAAGGATAAGAAGGAGAAGCCAAAGCCAAAACGGCAACCCATGGATTTTCTCTTCCTTTCCATTTCCCTCTCTCTATTCTCTCTCCTTCTTGCCTTGAGGTTTCTTCTTCGACTTCATCGCCAAAACCTTCCACCAACCCCATTTTTATGTCTTCCAATTATTGGTCATCTCCATCTCATCAAACATCCTATCCATAGAATCCTTCACAACCTCTCCAAAAAGTATGGAGATGTCTTCTCGCTCCGATTTGGTTCACGACTCGTCGTAGTTCTATCATCCTCTTCTATCGTCCAAGAATGTTTTGCAAAGAATGACATTGTTCTCGCAAATCGGCCCTTGTTGGGCACTGGAAAGCACTTGGCATACAACCATACCACCATGGCGGTCACCCCTTATGGTGAACACTGGCGAAACCTACGTCGAATCGGCGCACTCGAGATTTTCTCGACGAGTCGATTAAATCTATTCTCGGGAATTCGAGAGGAGGAAGTTAAAGGGTTGATGGTTAGATTATGTGGGAGTTCATTGGAAGAATTCAAACTAGTGGAGCCGGAGAGTATGTTTTTAGATCTTATGTACAATGTTATTATGAGAATGGTGAGTGGGAAGAAGCCTTATTATGAAGAGGATAAGGAAAAATCAAGGGAATTTAGAGAGGTGGTGACAAAGATTATGGAGGTTGGTGGGACAACAAATCCAGGAGACTTCATACCTATTTGGAATTGGATTGATCCGAGTGGGTTGGAGAAGAAGATCATAAAGCTTGGAGAAACAATGGATGTATTTCTTCAAGATTTAGTTGATGGGATAAGAAATCAGAAAGGTGAAGGGAATGCTATGATTCATCGTTTACTTCATTTGCAGGAAACTGAGCCTGAGAATCATAGTGACCAAATTATCAAAGGCCTAATACAAAAAGCAAAAATTGAGATAGACAGTGTCATTGGACAAGAGCGTCTAGTGAATGAAGCCGATTTGTCAAGTTTAAACTATCTACAAGGAATAATTTCCGAAACTCTTCGATTAAACCCAGCAGCTCCTTTGCTTGTTCCTCATTGTGCTTCCGAAGATTGTAAAATTAGAGGCTATGACATACCACGTAACACAATTGTGTTGATTAATGCTTGGGCTATTCATAGAGATCCCAACCTATGGGAAGATGCCACAAATTTTAAGCCTGAAAGACATACAAATCCTATTGGAGTTGATTCATATAAATTATTACCATTTGGATTGGGGAGGAGAGCTTGCCCGGGAATAGGAATAGCTCAACGGATGGCTACCTTGACTTTAGCAATGATGATTCAATGCTTTGAGTGGGAAAGAGAGGGCTCTTCATTGGTTGATATGAGTGAAGGTGAAGGGATTACTATGCCCAAAGCTCAAAGATTGGTAGCCAAATGCAAACCACGTCCAATCATGAAAGCTATTTTTAGCGAAGGAACATTGATGGAAGAGACACGCGCCCAGGGCAAGAGCGCTGCAGCACGACGCTCCGTTTTGGGGTATGAGCTTCCCTGCGTGTCCCCTAGTGTCGCGTTCTCTCATGTAATCCATAGAGACGATGTTAGGTTTTGTCTTCTCCATCATTATGAGAAGTGCCTTTTCAAGTTTCATCTTCCAATTCCAACCGTTCGCTGCTCACAAGCCACAAACATTCAATGTTCCATTCTGTCAATCATTGTTCTTCATTCTTCGGCATTTCATCTTCCAGTGTCAGATCTTGTTCACAAAAAGCCACAAATCGCACCAGAACCGCTTGGCAGTTGTAAATCGATCTCGTTCAGTGTACTGTCTTCCAATTTCTACTTCGTCAGCTGCAAATCACTCCAACCCGATGACTCAACTCGAAAATATATGGTGCGACCCTCCATAAACCTTCCCCCAAGTCCCCCCTTTTCTCTCCCAATTATAGGCCATCTCTATCTCCTAAAACGCCCCATCCATCAAACCCTTCAAAAGCTTTCCAAGAAATATGGCCATGTCTTCTCCCTCCGCTTAGGCTCCCAACTCGTTGTCGTCGTTTCTTCTCCTTCCGCCGTCAAAGAATGCTTCACAGTAAACGATATCATTCTCGCAAATCGTCCACTGTCCAACATTAGCAAGCACTTGACTTACAACAACACGATCTTCTCGGCGTCTCCTTATGGCGACCATTGGCGAGACCTCCGCCGAATTAGCACCATAGAGATTTTCTCAGCCACTCGCCTTAATAAGTTTTTGGAGATTAGGAAGGACGAAATCAAACGCTTACTTGGTAAGTTGTGTGGCATTTCAAGTGATGGTTTTGCGAGAGTTGAGATGGGATCCATGTTTTCTGAGTTGTCGTCTAATATTGTGATGAGAATGGTGATGGGGAAGAGGTTTTATGGAGAGGATGTGTTGGATGTAGAACAAGCAAGGGAATTTAAAGTTATTGTCAAACAAGTTATGGAAAATTGTGGGACTTACAATTCAAGAAGTTTTATACCCTTGTTGAATTGGATTGATATAACTCGTTATGAGAAAAGGGTAATAAAACTTGGACAACGAAACGATCAATTTTTGCAAGGGTTGATTGATGAGCATAGGAATCAAAAGGAAGAAGGTAGAAAGACTATGATTGATCATTTACTTTCCTTGCAAGAATCCCAACTTGATTTTATGAGTGATCAAGTTATCAAAGGTCTTATAATGGTAATATTACTTGCAGGCACTGACACAGTAGCTGTGACAATGGAATGGGCACTGTCCCATTTGCTCAACAATCCTGATGTGCTAAACAATGCTAGGATCGAGTTGGACTCAGTAATTGGACAAGAGCGATTGGTCGATGAATCTGATTTATCAAAATTGAGTTATTTACAAGGAATAATCTCTGAGACCTTACGATTAAACCCAGCAGCTCCTTTATTAGTGCCACATTATACATCTAAAAATTGTTCAATAGCAGGCTACGAAATCCCCCGCGATACGATCGTCTTGATTAATGCTTGGGCAATACATAGAGATCCAAACATATGGGAAGATGCAACTACATTTAACCCTGAAAGATATAAGAACCTCAATGTAGATGAGTTATTGTACAAGCTAATACCTTTCGGTGTCGGGCGGAGAGCTTGCCCTGGTGTGGGAATGGCTCATCGTGTGGTTGGCTTGGCTTTGGCGTCATTGATTCAATGCTTTGAATGGAATAGGGTGAATAGTAAACTTGTTGACATGGTCGAGGGCGTTGGGCTCACAATGCCTAGAGCTCAACCATTGCAAGTCATGTGTAAATCCCGGCCAATCATGGAAAGGGTTCTCATTTAA 3294 42.08 MKDKKEKPKPKRQPMDFLFLSISLSLFSLLLALRFLLRLHRQNLPPTPFLCLPIIGHLHLIKHPIHRILHNLSKKYGDVFSLRFGSRLVVVLSSSSIVQECFAKNDIVLANRPLLGTGKHLAYNHTTMAVTPYGEHWRNLRRIGALEIFSTSRLNLFSGIREEEVKGLMVRLCGSSLEEFKLVEPESMFLDLMYNVIMRMVSGKKPYYEEDKEKSREFREVVTKIMEVGGTTNPGDFIPIWNWIDPSGLEKKIIKLGETMDVFLQDLVDGIRNQKGEGNAMIHRLLHLQETEPENHSDQIIKGLIQKAKIEIDSVIGQERLVNEADLSSLNYLQGIISETLRLNPAAPLLVPHCASEDCKIRGYDIPRNTIVLINAWAIHRDPNLWEDATNFKPERHTNPIGVDSYKLLPFGLGRRACPGIGIAQRMATLTLAMMIQCFEWEREGSSLVDMSEGEGITMPKAQRLVAKCKPRPIMKAIFSEGTLMEETRAQGKSAAARRSVLGYELPCVSPSVAFSHVIHRDDVRFCLLHHYEKCLFKFHLPIPTVRCSQATNIQCSILSIIVLHSSAFHLPVSDLVHKKPQIAPEPLGSCKSISFSVLSSNFYFVSCKSLQPDDSTRKYMVRPSINLPPSPPFSLPIIGHLYLLKRPIHQTLQKLSKKYGHVFSLRLGSQLVVVVSSPSAVKECFTVNDIILANRPLSNISKHLTYNNTIFSASPYGDHWRDLRRISTIEIFSATRLNKFLEIRKDEIKRLLGKLCGISSDGFARVEMGSMFSELSSNIVMRMVMGKRFYGEDVLDVEQAREFKVIVKQVMENCGTYNSRSFIPLLNWIDITRYEKRVIKLGQRNDQFLQGLIDEHRNQKEEGRKTMIDHLLSLQESQLDFMSDQVIKGLIMVILLAGTDTVAVTMEWALSHLLNNPDVLNNARIELDSVIGQERLVDESDLSKLSYLQGIISETLRLNPAAPLLVPHYTSKNCSIAGYEIPRDTIVLINAWAIHRDPNIWEDATTFNPERYKNLNVDELLYKLIPFGVGRRACPGVGMAHRVVGLALASLIQCFEWNRVNSKLVDMVEGVGLTMPRAQPLQVMCKSRPIMERVLI 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2729368 2745624 + Lsi10G001690.1 Lsi10g00169 671726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00169 1097 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 22 307 - -
Lsi10g00169 1097 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 623 1094 - -
Lsi10g00169 1097 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 305 478 - -
Lsi10g00169 1097 Gene3D Cytochrome P450 38 304 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 Gene3D Cytochrome P450 617 1093 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 Gene3D Cytochrome P450 305 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 Pfam Cytochrome P450 46 289 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 Pfam Cytochrome P450 305 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 Pfam Cytochrome P450 630 1074 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 SUPERFAMILY Cytochrome P450 45 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 305 478 - -
Lsi10g00169 1097 PRINTS P450 superfamily signature 898 915 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS P450 superfamily signature 951 962 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS P450 superfamily signature 1026 1035 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 SUPERFAMILY Cytochrome P450 629 1089 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506|GO:0016705
Lsi10g00169 1097 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 623 1094 - -
Lsi10g00169 1097 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 22 307 - -
Lsi10g00169 1097 PRINTS E-class P450 group I signature 887 904 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 991 1015 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 1025 1035 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 1035 1058 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 950 968 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 657 676 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 776 794 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 PRINTS E-class P450 group I signature 907 933 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00169 1097 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1028 1037 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00943 Lsi-Chr1:7635001 Lsi10g00169 Lsi-Chr10:2729368 5.96E-145 dispersed
Lsi01g00944 Lsi-Chr1:7654783 Lsi10g00169 Lsi-Chr10:2729368 4.32E-166 dispersed
Lsi03g01218 Lsi-Chr3:22737963 Lsi10g00169 Lsi-Chr10:2729368 1.42E-55 dispersed
Lsi09g01788 Lsi-Chr9:26616377 Lsi10g00169 Lsi-Chr10:2729368 2.32E-137 dispersed
Lsi10g00164 Lsi-Chr10:2642614 Lsi10g00169 Lsi-Chr10:2729368 3.25E-164 dispersed
Lsi10g00169 Lsi-Chr10:2729368 Lsi04g01511 Lsi-Chr4:22748193 4.65E-143 dispersed
Lsi10g00168 Lsi-Chr10:2711002 Lsi10g00169 Lsi-Chr10:2729368 0 tandem
Lsi10g00169 Lsi-Chr10:2729368 Lsi10g00170 Lsi-Chr10:2764165 3.40E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00169 K13260 - mcha:111017884 625.935