Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00170 ATGGATTCTCTCTACGCTTTCCTTCTTTTCCTTCTTGCTTTCCTTTTTCTGCAACTCAGAACCCGCCGGAGAAATCTGCCGCCGAGCCCACCGTCAGTTCCGATTATTGGTCATCTCCACCTCCTACAACGCCCAATCCACCGGAGCTTCCAAAACATCGCCGCCAAATACGGACCCATTTTCACTCTGCGATTCGGATCTCGCCTTGCCCTGCTAGTCTCTTCACTTCAAATAGCCCAAGAATGCTTCACCAAAAACGACCTCATCTTTGCCAACCGCCCGCGTTTGCTCATCGGAAAATACATCGGCTACGACAACACCACCATGGCTACCGCCCCTTATGGCGAACACTGGCGGAACCTCCGCCGCCTCGCCGCCGTGGAGATCTTCTCTCCGACGCGCCTCAAAGCGTCTCTAGGCATCCGGAAGGATGAAATCCGACGATTGTTGGTCAAACTCCATTCGGAATCGTTCGCTAAGGTGGAGTTGAGATCGATGTTTTCGGAACTGAGTTTCAACATCGTGATGAGGATCGTGGCCGGAAAACGGTACTACGGCGATGAGGTTTCCGATGAGGCGGAGGCCAGGGAATTCAGAGAGCTTATGGAAGAGATTTCGCGTCATGGGGGCACTTCGCAATGGGTGGATTTCATGCCGATTTTGAAATGGATTGGGTTTGATGGATATGAGAAGAGTTTGGCCAAATCGGGGAAAAGGACCGATCAATTCGTGCAGGAATTGGTTGAAGAACAACGGAACAAAAAAGTATTGGCAAGAGAAGAACAGAGTTCTCTGCTTCATCGGCTTCTGGAATTGCAGCTCTCTAAACCCGAATACTACACCGATCAGACCATCAAAGGGTTCGTTCTGGTTAAGATATTAGCCAAAGCCAAAGCTGAGATAGACACCAAGATCGGTCAAGATCGACCCATTGAGGAAACAGATATCGCCAACCTCAACTACCTTCAAGCCATTATTTCTGAAACCTTTCGATTGCACCCTCCAGCCCCAATGCTCCTCACACACTATTCCTCCGAAGACTGCACCGTTGCAGGCTACGATATTCCACGTGGCACGATGTTGTTGGTCAATGCTTGGGCAATTCACAGAGACCCGAAGCTGTGGGACGACCCGACGAGCTTCCGACCGGAGAGATTCTTGGGGGAAGGGAATGAGTTGCAGGCCAACAAACTGATTCCTTTTGGAGTTGGAAGGAGGGCTTGTCCTGGGGAAATTATGGGTTTACGTATTATAGGATTGACTTTGGGTCTATTGATTCAGTGTTATGAGTGGAAAAAGGTTGGATATGAAAACGTAGATATGACTGAAGGTGGAGGTATCACCATTCTCAAAGTGAAGCCTTTGGAAACCATGTGTAAAGCTCGACCAATCATGGATAAAGTTTTTTCAAATGGTTTGGACTAA 1425 48.84 MDSLYAFLLFLLAFLFLQLRTRRRNLPPSPPSVPIIGHLHLLQRPIHRSFQNIAAKYGPIFTLRFGSRLALLVSSLQIAQECFTKNDLIFANRPRLLIGKYIGYDNTTMATAPYGEHWRNLRRLAAVEIFSPTRLKASLGIRKDEIRRLLVKLHSESFAKVELRSMFSELSFNIVMRIVAGKRYYGDEVSDEAEAREFRELMEEISRHGGTSQWVDFMPILKWIGFDGYEKSLAKSGKRTDQFVQELVEEQRNKKVLAREEQSSLLHRLLELQLSKPEYYTDQTIKGFVLVKILAKAKAEIDTKIGQDRPIEETDIANLNYLQAIISETFRLHPPAPMLLTHYSSEDCTVAGYDIPRGTMLLVNAWAIHRDPKLWDDPTSFRPERFLGEGNELQANKLIPFGVGRRACPGEIMGLRIIGLTLGLLIQCYEWKKVGYENVDMTEGGGITILKVKPLETMCKARPIMDKVFSNGLD 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2764165 2767702 + Lsi10G001700.1 Lsi10g00170 671727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00170 474 Pfam Cytochrome P450 27 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 Pfam Cytochrome P450 293 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 6 295 - -
Lsi10g00170 474 Gene3D Cytochrome P450 294 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 292 467 - -
Lsi10g00170 474 Gene3D Cytochrome P450 19 293 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 398 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 408 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 170 188 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 78 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 364 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 323 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PRINTS E-class P450 group I signature 54 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 295 - -
Lsi10g00170 474 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 292 467 - -
Lsi10g00170 474 SUPERFAMILY Cytochrome P450 27 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00170 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 401 410 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00170 Lsi-Chr10:2764165 Lsi04g01511 Lsi-Chr4:22748193 4.56E-156 dispersed
Lsi10g00177 Lsi-Chr10:2874047 Lsi10g00170 Lsi-Chr10:2764165 4.64E-51 dispersed
Lsi10g00170 Lsi-Chr10:2764165 Lsi10g00172 Lsi-Chr10:2780304 1.58E-110 proximal
Lsi10g00169 Lsi-Chr10:2729368 Lsi10g00170 Lsi-Chr10:2764165 3.40E-156 tandem
Lsi10g00170 Lsi-Chr10:2764165 Lsi10g00171 Lsi-Chr10:2778155 8.97E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00170 K13260 - csv:101210967 757.288