Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00172 ATGACTCAACTCCTCAACAATCCAGAGGTATTAGCCAAAGCCAAAGCTGAGATAGACACCAAAATAGGTCAAGATCGACCCCTTGAGGAAGCAGATCTCTCTAACCTCAACTACCTTCAAGCCATTATTTCCGAGACCCTCCGATTGCATCCCGCAGCGCCAATGCTCCTCACACACTATTCCTCCGACGACTGCACCATCGCAGTCTACAACATTCCACGTGGGACGACGTTGTTGGTCAATGCTTGGGCAATTCACAGAGACCTGAAGCTATGGGACGACCCGACGAGCTTCCGACCGGAGAGATTTTTGGGGGCAGAGAATGGGTTGCAGTCGAACAAACTCATTCCTTTTGGAATTGGAAGGAGGGCTTGTCCTGGGGAAACTATGGCTCTACGTTTTATAGGATTGACTTTGGGGCTATTGATTCAGTGTTATGAGTGGAAAAAGGCCGGAGGATGTGAAAAGGTTGACATGACTGAGGGTGGAGGTATCACCATTCATAAAGTGAAGCCTTTGGAAACTATGTGTAAACCTCGTCTAATTATGGATAAAGTTCTTTCAAATGGTTTGGACTAA 579 46.98 MTQLLNNPEVLAKAKAEIDTKIGQDRPLEEADLSNLNYLQAIISETLRLHPAAPMLLTHYSSDDCTIAVYNIPRGTTLLVNAWAIHRDLKLWDDPTSFRPERFLGAENGLQSNKLIPFGIGRRACPGETMALRFIGLTLGLLIQCYEWKKAGGCEKVDMTEGGGITIHKVKPLETMCKPRLIMDKVLSNGLD 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2780304 2780882 + Lsi10G001720.1 Lsi10g00172 671729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00172 192 Pfam Cytochrome P450 2 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 118 127 IPR017972 GO:0005506|GO:0016705
Lsi10g00172 192 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 185 - -
Lsi10g00172 192 Gene3D Cytochrome P450 1 182 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS E-class P450 group I signature 125 148 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS E-class P450 group I signature 115 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 1 185 - -
Lsi10g00172 192 PRINTS P450 superfamily signature 125 136 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 PRINTS P450 superfamily signature 116 125 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00172 192 SUPERFAMILY Cytochrome P450 2 180 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00172 Lsi-Chr10:2780304 Lsi01g00944 Lsi-Chr1:7654783 1.61E-75 dispersed
Lsi10g00170 Lsi-Chr10:2764165 Lsi10g00172 Lsi-Chr10:2780304 1.58E-110 proximal
Lsi10g00172 Lsi-Chr10:2780304 Lsi10g00177 Lsi-Chr10:2874047 1.34E-54 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00172 K13260 - csv:101210967 310.071