Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00183 ATGAGCTTCATTCTTGCTTTTTTTCTTCTTTTTCTTCTTCAATCTTCTTGCAATGGACTCAGTTTTGATGGGATTCTCTTGCTTTCCTTTAAGTATGCCGTTTTGGACGATCCTCTATTTGTTCTTCAGAACTGGAATTACTCCGACGATACCCCATGTTCATGGCGAGGAGTTGTATGTTCCGCTGATGGTTCCGGTGGCTCTAGAGTTACAGGTTTGTCTCTTCCGAATTCTCAGCTTATGGGCTCTGTTTCTTCTGATCTGGGTCTGATTCAAAATCTTCAATCGGTTGATCTTTCTAATAATTCCTTTAATGGGTCTATCCCTCGGTCTCTGTTCAACGCCACCATGCTACGGTTTCTTGATTTGTCGGAGAATTTGATTTCCGGCGAGGTTCCTGGGCCGGAGGGTAACCTTGGGAATCTGCAAGTTCTTAACCTTTCCGGTAATGCTCTGTTCGGGAAGTTTCCAAGTGATCTGGTGAATTTGGGTAATCTCACGGTTGTGTCTCTGAAGAACAATTACATTTCCGGTGAAATTCCCGGTGGGTTTAAAACGGTGGAGGTTTTGGATCTGTCTTCCAATTTGATTAATGGGTCTTTGCCGACTGATTTTGGTGGAGATAGTTTACATTACTTCAACATCTCATTCAACAGACTTTCCGGCGAAATTCCGCCGGATTTCGCCCACAAAATTCCAGCCAATGCCATAATTGATCTCTCCTTCAACAATCTCACCGGAGAAGTCCCTGTTTCCGACGTGTTCATGAACCAAGAAGCAAACTCCTTCACCGGAAACCATCAACTCTGCGGTGAGTTAACGAAAACCCCATGCCCAATTACTTCTTCACCGTCGTCTCTCCCGCCGGCGATCGCCGCCATTCCGTTAGACCCAAGTACCCCAGAAAAAACCTCGCCGGAAAAACAGAGCGAAACAGGGTTTAAACCGTCCACAATCGTGGCCATTGTACTGGGAGACGTCGTCGGATTGGCAATTCTGTGCCTTCTCTTCTTCTACGTCTTCCATTTGAAGAAAAAAAACAAAGCCGTCGAAACCCATTTGAAAAACGAACCCAATTTGGCGAAAGACAGTTGGTCCACATCCTCATCAGAATCCAGAGGATTTTCACGATGGTCCTGCTTGAGAAAAACAGGGGATCCAGAAGAGGCAAATTCCGATCAAGCGAGTGTGATATCCTTCTCCGGGCACCGTGAGACGGCGGTGGAGGGAGGAGAAGAGAACAAGAGAGGAACATTAGTAACAGTAGACGGCGGAGAGAAGGAGCTGGAACTCGATACTCTGCTAAAGGCATCGGCATACATTCTGGGCGCCACCGGATCGAGCATAACGTACAAGGCGGTGCTGGAAGACGGCACGGCGTTTGCAGTGAGGAGAATCGGAGACGGCGGAGTTGAAAAATATAAAGATTTCGAGAATCAGATTCGTTTTGTGGCTAAATTGGTTCACCCAAATTTGGTTCGTGTTCGTGGATTTTATTGGGGTGTTGATGAAAAGCTCATTATTTACGATTTTGTTCCTAATGGTAGCCTTGCAAATGCTCGTTACAGGAAAGTGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTAAGAATTGCAAAAGGAGTGGCCCGTGGCCTTTCTTACCTCCACGACAAGAAGCATGTCCATGGCAACTTAAGGCCCACCAACATTCTTTTGGGCTTCGATATGGAGCCCAAGATAGGTGATTTCAGTCTCGACAAGCTCTTCTTAGGCGACTCGAGCTACAAACCTGGTGGCTCCACTCGAAATTTCGGGAGTAAAAGGTCTACAGCGTCTCGAGATAGCTTCCAAGATTTTGTCACTGGACCTAGCCCTGGACCGAGCCCGAGCTCAATCAGTGGAGTGTCGCCGTATTTAGCACCAGAGTCACTTCGAAGCTTGAAGCCTAACTCGAAATGGGATGTGTACTCTTTTGGAGTGATATTGCTCGAGTTACTAACCGGAAAGATCGTAGTGTTGGATGAGTTGGGTCAAGGGCTTGGACTTGCAGTCGAAGACAAGAGCCGAACCATAAGAATGGTTGACATGGCGATTCGAGCTGACGTGGAGGGTAGAGAAGAAGCATTGTTATCTTGCTTTAAATTAGGATATAGTTGTGCATCTCCTGCCCCACAAAAGAGACCATCCATGAAAGAAGCCTTGCAAGTTTTGGAGAAATTTCCAACCATATCCATGTCATCACACTATTATGGTCTCTAG 2247 46.64 MSFILAFFLLFLLQSSCNGLSFDGILLLSFKYAVLDDPLFVLQNWNYSDDTPCSWRGVVCSADGSGGSRVTGLSLPNSQLMGSVSSDLGLIQNLQSVDLSNNSFNGSIPRSLFNATMLRFLDLSENLISGEVPGPEGNLGNLQVLNLSGNALFGKFPSDLVNLGNLTVVSLKNNYISGEIPGGFKTVEVLDLSSNLINGSLPTDFGGDSLHYFNISFNRLSGEIPPDFAHKIPANAIIDLSFNNLTGEVPVSDVFMNQEANSFTGNHQLCGELTKTPCPITSSPSSLPPAIAAIPLDPSTPEKTSPEKQSETGFKPSTIVAIVLGDVVGLAILCLLFFYVFHLKKKNKAVETHLKNEPNLAKDSWSTSSSESRGFSRWSCLRKTGDPEEANSDQASVISFSGHRETAVEGGEENKRGTLVTVDGGEKELELDTLLKASAYILGATGSSITYKAVLEDGTAFAVRRIGDGGVEKYKDFENQIRFVAKLVHPNLVRVRGFYWGVDEKLIIYDFVPNGSLANARYRKVGSSPCHLPWEARLRIAKGVARGLSYLHDKKHVHGNLRPTNILLGFDMEPKIGDFSLDKLFLGDSSYKPGGSTRNFGSKRSTASRDSFQDFVTGPSPGPSPSSISGVSPYLAPESLRSLKPNSKWDVYSFGVILLELLTGKIVVLDELGQGLGLAVEDKSRTIRMVDMAIRADVEGREEALLSCFKLGYSCASPAPQKRPSMKEALQVLEKFPTISMSSHYYGL 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3040323 3043826 + Lsi10G001830.1 Lsi10g00183 671740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00183 748 Pfam Leucine Rich repeats (2 copies) 116 156 IPR025875 -
Lsi10g00183 748 SUPERFAMILY Protein kinase-like (PK-like) 441 734 IPR011009 -
Lsi10g00183 748 Gene3D Transferase(Phosphotransferase) domain 1 512 744 - -
Lsi10g00183 748 SUPERFAMILY L domain-like 28 271 - -
Lsi10g00183 748 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 738 - -
Lsi10g00183 748 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Lsi10g00183 748 Gene3D Ribonuclease Inhibitor 185 280 IPR032675 -
Lsi10g00183 748 ProSiteProfiles Protein kinase domain profile. 436 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00183 748 Pfam Protein kinase domain 442 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00183 748 MobiDBLite consensus disorder prediction 611 631 - -
Lsi10g00183 748 Gene3D Phosphorylase Kinase; domain 1 410 511 - -
Lsi10g00183 748 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Lsi10g00183 748 PANTHER BNAC07G16060D PROTEIN 5 738 - -
Lsi10g00183 748 Pfam Leucine Rich Repeat 93 112 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00235 Lsi-Chr5:3107681 Lsi10g00183 Lsi-Chr10:3040323 0 dispersed
Lsi09g00625 Lsi-Chr9:6888963 Lsi10g00183 Lsi-Chr10:3040323 2.78E-130 dispersed
Lsi10g00183 Lsi-Chr10:3040323 Lsi03g01949 Lsi-Chr3:30886044 9.64E-77 dispersed
Lsi10g00183 Lsi-Chr10:3040323 Lsi04g00224 Lsi-Chr4:2329328 1.51E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83938 PF00069 Pkinase 3.80E-28 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00183 - - bhj:120088533 1351.27